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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 14204

FusionGeneSummary for GAB2_PTPRT

check button Fusion gene summary
Fusion gene informationFusion gene name: GAB2_PTPRT
Fusion gene ID: 14204
HgeneTgene
Gene symbol

GAB2

PTPRT

Gene ID

9846

11122

Gene nameGRB2 associated binding protein 2protein tyrosine phosphatase, receptor type T
Synonyms-RPTPrho
Cytomap

11q14.1

20q12-q13.11

Type of geneprotein-codingprotein-coding
DescriptionGRB2-associated-binding protein 2Grb2-associated binder 2growth factor receptor bound protein 2-associated protein 2pp100receptor-type tyrosine-protein phosphatase TR-PTP-TRPTP-rhoreceptor protein tyrosine phosphatasereceptor-type tyrosine-protein phosphatase rho
Modification date2018052720180519
UniProtAcc

Q9UQC2

O14522

Ensembl transtripts involved in fusion geneENST00000340149, ENST00000361507, 
ENST00000526030, 
ENST00000373184, 
ENST00000373187, ENST00000356100, 
ENST00000373190, ENST00000373193, 
ENST00000373198, ENST00000373201, 
ENST00000485499, 
Fusion gene scores* DoF score16 X 10 X 5=80010 X 8 X 6=480
# samples 1610
** MAII scorelog2(16/800*10)=-2.32192809488736
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/480*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GAB2 [Title/Abstract] AND PTPRT [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneGAB2

GO:0008284

positive regulation of cell proliferation

19172738

TgenePTPRT

GO:0006470

protein dephosphorylation

16973135

TgenePTPRT

GO:0007156

homophilic cell adhesion via plasma membrane adhesion molecules

18644975


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSKCMTCGA-YG-AA3P-06AGAB2chr11

78128692

-PTPRTchr20

40828028

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000340149ENST00000373184GAB2chr11

78128692

-PTPRTchr20

40828028

-
intron-3CDSENST00000340149ENST00000373187GAB2chr11

78128692

-PTPRTchr20

40828028

-
intron-3CDSENST00000340149ENST00000356100GAB2chr11

78128692

-PTPRTchr20

40828028

-
intron-3CDSENST00000340149ENST00000373190GAB2chr11

78128692

-PTPRTchr20

40828028

-
intron-3CDSENST00000340149ENST00000373193GAB2chr11

78128692

-PTPRTchr20

40828028

-
intron-3CDSENST00000340149ENST00000373198GAB2chr11

78128692

-PTPRTchr20

40828028

-
intron-3CDSENST00000340149ENST00000373201GAB2chr11

78128692

-PTPRTchr20

40828028

-
intron-intronENST00000340149ENST00000485499GAB2chr11

78128692

-PTPRTchr20

40828028

-
Frame-shitENST00000361507ENST00000373184GAB2chr11

78128692

-PTPRTchr20

40828028

-
Frame-shitENST00000361507ENST00000373187GAB2chr11

78128692

-PTPRTchr20

40828028

-
Frame-shitENST00000361507ENST00000356100GAB2chr11

78128692

-PTPRTchr20

40828028

-
Frame-shitENST00000361507ENST00000373190GAB2chr11

78128692

-PTPRTchr20

40828028

-
Frame-shitENST00000361507ENST00000373193GAB2chr11

78128692

-PTPRTchr20

40828028

-
Frame-shitENST00000361507ENST00000373198GAB2chr11

78128692

-PTPRTchr20

40828028

-
Frame-shitENST00000361507ENST00000373201GAB2chr11

78128692

-PTPRTchr20

40828028

-
5CDS-intronENST00000361507ENST00000485499GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-3CDSENST00000526030ENST00000373184GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-3CDSENST00000526030ENST00000373187GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-3CDSENST00000526030ENST00000356100GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-3CDSENST00000526030ENST00000373190GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-3CDSENST00000526030ENST00000373193GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-3CDSENST00000526030ENST00000373198GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-3CDSENST00000526030ENST00000373201GAB2chr11

78128692

-PTPRTchr20

40828028

-
5UTR-intronENST00000526030ENST00000485499GAB2chr11

78128692

-PTPRTchr20

40828028

-

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FusionProtFeatures for GAB2_PTPRT


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GAB2

Q9UQC2

PTPRT

O14522

Adapter protein which acts downstream of severalmembrane receptors including cytokine, antigen, hormone, cellmatrix and growth factor receptors to regulate multiple signalingpathways. Regulates osteoclast differentiation mediating theTNFRSF11A/RANK signaling. In allergic response, it plays a role inmast cells activation and degranulation through PI-3-kinaseregulation. Also involved in the regulation of cell proliferationand hematopoiesis. {ECO:0000269|PubMed:15750601,ECO:0000269|PubMed:19172738}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for GAB2_PTPRT


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for GAB2_PTPRT


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GAB2BCR, GRB2, ETV6, ARHGAP32, LYN, PLCG2, PTPN11, SHC1, ZAP70, CD247, LAT, PTPN6, PIK3R1, AKT1, GRAP, SRC, NCK1, PLCG1, CRKL, MET, GRAP2, LRRK1, PIK3R2, CRK, PIK3CB, MAPK1, MAPK3, MARK2, GAB1, GAB2, YWHAE, NTRK1, XPO1, FRS2, TGM4, KCTD3, KIF13B, ZBTB21, KSR1, GIGYF1, LRFN1, DENND1A, SH3PXD2A, SRGAP2, EIF4E2, SIPA1L1, LIMA1, MAGI1, TESK2, DCLK1, ZNF638, SRSF12, RTKN, MAST3, SYDE1, PPM1H, AGAP1, CDC25B, CDK16, FAM110B, USP21, ANKRD34A, FAM53C, CGN, FAM110A, DENND4C, HDAC4, MAPKAP1, TBC1D25, NF1, NADK, CBY1, RAB3IPPTPRTCUL3, EGFR, ERBB2, ERBB4, ATP2A2, PHKA1, PHKB


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GAB2_PTPRT


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GAB2_PTPRT


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneGAB2C0025202melanoma1CTD_human
HgeneGAB2C0027626Neoplasm Invasiveness1CTD_human
HgeneGAB2C0027627Neoplasm Metastasis1CTD_human