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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 13985

FusionGeneSummary for FRYL_FAM19A2

check button Fusion gene summary
Fusion gene informationFusion gene name: FRYL_FAM19A2
Fusion gene ID: 13985
HgeneTgene
Gene symbol

FRYL

FAM19A2

Gene ID

285527

338811

Gene nameFRY like transcription coactivatorfamily with sequence similarity 19 member A2, C-C motif chemokine like
SynonymsAF4p12|KIAA0826|MOR2TAFA-2|TAFA2
Cytomap

4p11

12q14.1

Type of geneprotein-codingprotein-coding
Descriptionprotein furry homolog-likeALL1-fused gene from chromosome 4p12 proteinFRY-likefurry homolog-likefurry-likemor2 cell polarity protein homologprotein FAM19A2chemokine-like protein TAFA-2family with sequence similarity 19 (chemokine (C-C motif)-like), member A2
Modification date2018052320180519
UniProtAcc

O94915

Q8N3H0

Ensembl transtripts involved in fusion geneENST00000503238, ENST00000358350, 
ENST00000537810, ENST00000264319, 
ENST00000507711, ENST00000514783, 
ENST00000507873, ENST00000506685, 
ENST00000416284, ENST00000551619, 
ENST00000550003, ENST00000551449, 
ENST00000549456, 
Fusion gene scores* DoF score14 X 11 X 11=169411 X 6 X 5=330
# samples 2110
** MAII scorelog2(21/1694*10)=-3.01197264166608
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/330*10)=-1.72246602447109
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FRYL [Title/Abstract] AND FAM19A2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSTADTCGA-CG-4476-01AFRYLchr4

48636308

-FAM19A2chr12

62261207

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000503238ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000503238ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000503238ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000503238ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000503238ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000358350ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000358350ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000358350ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000358350ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000358350ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000537810ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000537810ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000537810ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000537810ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000537810ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5UTR-5UTRENST00000264319ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5UTR-5UTRENST00000264319ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5UTR-intronENST00000264319ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5UTR-5UTRENST00000264319ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5UTR-intronENST00000264319ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000507711ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000507711ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000507711ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-5UTRENST00000507711ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
5CDS-intronENST00000507711ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000514783ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000514783ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-intronENST00000514783ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000514783ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-intronENST00000514783ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000507873ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000507873ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-intronENST00000507873ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000507873ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-intronENST00000507873ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000506685ENST00000416284FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000506685ENST00000551619FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-intronENST00000506685ENST00000550003FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-5UTRENST00000506685ENST00000551449FRYLchr4

48636308

-FAM19A2chr12

62261207

-
intron-intronENST00000506685ENST00000549456FRYLchr4

48636308

-FAM19A2chr12

62261207

-

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FusionProtFeatures for FRYL_FAM19A2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FRYL

O94915

FAM19A2

Q8N3H0

Plays a key role in maintaining the integrity ofpolarized cell extensions during morphogenesis, regulates theactin cytoskeleton and plays a key role in patterning sensoryneuron dendritic fields by promoting avoidance between homologousdendrites as well as by limiting dendritic branching (Bysimilarity). May function as a transcriptional activator.{ECO:0000250, ECO:0000269|PubMed:16061630}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for FRYL_FAM19A2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for FRYL_FAM19A2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FRYLHOMER3, YWHAG, BAK1, YWHAB, DISC1, SIRT7, GRK5, NOTCH1, MMS19, PELI2, SLMAP, ABCF1, KIAA0930, MARK2, POLH, YWHAH, TACC3, PDZK1, FRY, HOMER1, FLNC, RNF138, FAM78BFAM19A2TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FRYL_FAM19A2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FRYL_FAM19A2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource