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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 13748

FusionGeneSummary for FOXA1_AIMP1

check button Fusion gene summary
Fusion gene informationFusion gene name: FOXA1_AIMP1
Fusion gene ID: 13748
HgeneTgene
Gene symbol

FOXA1

AIMP1

Gene ID

3169

9255

Gene nameforkhead box A1aminoacyl tRNA synthetase complex interacting multifunctional protein 1
SynonymsHNF3A|TCF3AEMAP2|EMAPII|HLD3|SCYE1|p43
Cytomap

14q21.1

4q24

Type of geneprotein-codingprotein-coding
Descriptionhepatocyte nuclear factor 3-alphaHNF-3-alphaHNF-3ATCF-3Aforkhead box protein A1transcription factor 3Aaminoacyl tRNA synthase complex-interacting multifunctional protein 1ARS-interacting multifunctional protein 1endothelial monocyte-activating polypeptide 2endothelial-monocyte activating polypeptide IImultisynthase complex auxiliary component p43mult
Modification date2018052320180523
UniProtAcc

P55317

Q12904

Ensembl transtripts involved in fusion geneENST00000250448, ENST00000540786, 
ENST00000545425, 
ENST00000442366, 
ENST00000358008, ENST00000394701, 
Fusion gene scores* DoF score2 X 1 X 1=21 X 1 X 1=1
# samples 21
** MAII scorelog2(2/2*10)=3.32192809488736log2(1/1*10)=3.32192809488736
Context

PubMed: FOXA1 [Title/Abstract] AND AIMP1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneFOXA1

GO:0032355

response to estradiol

16087863

HgeneFOXA1

GO:0043065

positive regulation of apoptotic process

19127412

HgeneFOXA1

GO:0045944

positive regulation of transcription by RNA polymerase II

16331276|19127412|20160041

TgeneAIMP1

GO:0001937

negative regulation of endothelial cell proliferation

11741979

TgeneAIMP1

GO:0007267

cell-cell signaling

11741979

TgeneAIMP1

GO:0050900

leukocyte migration

11306575


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDPRADTCGA-KK-A7B4-01AFOXA1chr14

38060605

-AIMP1chr4

107258026

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000250448ENST00000442366FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000250448ENST00000358008FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000250448ENST00000394701FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000540786ENST00000442366FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000540786ENST00000358008FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000540786ENST00000394701FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000545425ENST00000442366FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000545425ENST00000358008FOXA1chr14

38060605

-AIMP1chr4

107258026

+
intron-3CDSENST00000545425ENST00000394701FOXA1chr14

38060605

-AIMP1chr4

107258026

+

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FusionProtFeatures for FOXA1_AIMP1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FOXA1

P55317

AIMP1

Q12904

Transcription factor that is involved in embryonicdevelopment, establishment of tissue-specific gene expression andregulation of gene expression in differentiated tissues. Isthought to act as a 'pioneer' factor opening the compactedchromatin for other proteins through interactions with nucleosomalcore histones and thereby replacing linker histones at targetenhancer and/or promoter sites. Binds DNA with the consensussequence 5'-[AC]A[AT]T[AG]TT[GT][AG][CT]T[CT]-3' (By similarity).Proposed to play a role in translating the epigenetic signaturesinto cell type-specific enhancer-driven transcriptional programs.Its differential recruitment to chromatin is dependent ondistribution of histone H3 methylated at 'Lys-5' (H3K4me2) inestrogen-regulated genes. Involved in the development of multipleendoderm-derived organ systems such as liver, pancreas, lung andprostate; FOXA1 and FOXA2 seem to have at least in part redundantroles (By similarity). Modulates the transcriptional activity ofnuclear hormone receptors. Is involved in ESR1-mediatedtranscription; required for ESR1 binding to the NKX2-1 promoter inbreast cancer cells; binds to the RPRM promoter and is requiredfor the estrogen-induced repression of RPRM. Involved inregulation of apoptosis by inhibiting the expression of BCL2.Involved in cell cycle regulation by activating expression ofCDKN1B, alone or in conjunction with BRCA1. Originally describedas a transcription activator for a number of liver genes such asAFP, albumin, tyrosine aminotransferase, PEPCK, etc. Interactswith the cis-acting regulatory regions of these genes. Involved inglucose homeostasis. {ECO:0000250, ECO:0000269|PubMed:16087863,ECO:0000269|PubMed:16331276, ECO:0000269|PubMed:18358809,ECO:0000269|PubMed:19127412, ECO:0000269|PubMed:19917725}. Non-catalytic component of the multisynthase complex.Stimulates the catalytic activity of cytoplasmic arginyl-tRNAsynthase (PubMed:10358004). Binds tRNA. Possesses inflammatorycytokine activity (PubMed:11306575). Negatively regulates TGF-betasignaling through stabilization of SMURF2 by binding to SMURF2 andinhibiting its SMAD7-mediated degradation (By similarity).Involved in glucose homeostasis through induction of glucagonsecretion at low glucose levels (By similarity). Promotes dermalfibroblast proliferation and wound repair (PubMed:16472771).Regulates KDELR1-mediated retention of HSP90B1/gp96 in theendoplasmic reticulum (By similarity). Plays a role inangiogenesis by inducing endothelial cell migration at lowconcentrations and endothelian cell apoptosis at highconcentrations (PubMed:12237313). Induces maturation of dendriticcells and monocyte cell adhesion (PubMed:11818442). Modulatesendothelial cell responses by degrading HIF-1A through interactionwith PSMA7 (PubMed:19362550). {ECO:0000250|UniProtKB:P31230,ECO:0000269|PubMed:10358004, ECO:0000269|PubMed:11157763,ECO:0000269|PubMed:11306575, ECO:0000269|PubMed:11818442,ECO:0000269|PubMed:12237313, ECO:0000269|PubMed:19362550}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for FOXA1_AIMP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for FOXA1_AIMP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FOXA1AR, ONECUT1, HDAC7, TLE1, ELAVL1, AHR, SEZ6L2, EED, PIAS1, SATB1, SATB2, NAA40, RECQL, CREB1, HOXB9, NACC1, NFIX, DLX1, DLX5, HOXD13, LDB1, NFIC, NKX2-5, PBX1, UBA7, UBP1, VARS, H2AFY, RCC1, MGME1, RPA2, ALX4, FOXA3, MSH3, PLOD2, HMGA1, KBTBD7, LDB2, TFAP4, PLOD1, KMT2C, NUP153, KRT13, DDX24, UTP20, UBTF, NOL6, RBM19, DDX47, ADAR, UTP18, WDR75, HNRNPH2, UTP14A, DDX56, DDX52, MPHOSPH10, NOL10, TBL3, DDX31, SKIV2L2, GLTSCR2, ESF1, RACGAP1, SSRP1, DDX50, H2AFX, NOP16, GPATCH4, LOC102724159, NSUN2, NOL8, RPL5, ALYREF, KIF23, XRN2, URB2, NOL11, DDX51, EXOSC10, KDM6A, DNTTIP2, POP1, NIP7, RBM34, TARDBP, RRP15, KRI1, REXO4, NOM1, NKRF, SDAD1, IGLC7, NOC4L, PAK1IP1, WDR12, AATF, DEK, CCDC137, RRP9, RCOR3, ODF2, EIF5A, PWP1, LUC7L2, PARN, C9orf114, DSG2, LOC113230, TOP2A, PHF2, CCDC59, YWHAB, DIMT1, UTP11L, DHX37, RRP36, WDR46, PPP1CC, LUC7L, HIST1H3A, DNAJC9, RPLP0, ISG20L2, DDX49, C11orf98, NR2F2, TMPO, RNH1, GAR1, NOL7, RPL13A, NGDN, USP36, GATA3, NSUN5, C14orf169, C3orf17, RALY, IGHG2, MCM7, PNO1, SRSF6, CIRBP, MCM3, PAXIP1, FUBP3, RPL28, WDR5, GRHL2, RPS27, UHRF1, RSL24D1, RPS17, ESR1, DNMT1, EXOSC2, ABT1, RPL10, NME1, ARL6IP4, SF1, GTF2I, DIEXF, CD3EAP, TSR1, RPS19BP1, DHX33, RAB10, PRSS1, HDGF, NOP10, TRIM33, SRSF9, PRDX2, HNRNPUL2, TUBGCP6, YLPM1, EIF1AY, SNRPGP15, DAZAP1, IGKV3-20, C12orf43, MAGOH, ARF3, CPSF7, ASH2L, DSTN, CMSS1, NOSIP, EZR, RBM4, ALKBH5, SEC14L5, SUMO1, L1RE1, PARP2, RPF1, POLR1E, TPT1, C6orf211, TRPS1, RPS5, EXOSC6, EXOSC9, DPY30, SRSF12, EXOSC4, RPL32, SAFB, FIP1L1, CSNK1A1, TXNDC17, GPI, TRA2A, NCOA3, ACTR3C, PINX1, FAM207A, RPL30, DDX42, ARF6, PRPF3, FCF1, SNRPA1, MCTS1, LAS1L, PHF6, DDX55, WBSCR22, POLR1C, STAU1, NCOA6, XPO1, SF3B4, HBD, TSPYL1, EXOSC3, CDK1, CORO7, TLE3, VPS35, AGR2, CCT6A, VRK1, HBA1, CBX5, PSIP1, CHD4, RBMX2, APRT, EXOSC1, MROH8, PRPF6, DNAJB1, LGALS3, CCDC67, ZFP42, RBM25, CHD3, ARPC2, XPO5, DNAH7, TEX10, DNAJA1, GMPS, SEPT11, OSTF1, FAM50A, CSE1L, RRP7A, MARS, GSTM3, PRMT6, PSMD2, ZYX, VWA8, RBM17, ZFP91, RBBP4, KPNA4, AGBL1, B4GAT1, KAT7, HNRNPUL1, MPHOSPH6, COPG1AIMP1RARS, SMURF2, UBC, PSMA7, CUL1, COPS5, APP, KARS, AIMP2, IARS, QARS, EPRS, MARS, LARS, DARS, EEF1E1, HSP90B1, MAPK8, PAN2, DNAJA1, EIF2S1, EIF2S3, EIF4G1, CCAR2, PTBP1, RPL13, RPL15, RPL21, RPL23A, RPL27A, RPL36, RPL7A, RPLP0, VARS, IQGAP1, PSMC6, RPL17, TSNAX, COMTD1, SDCBP, ATP6V1F, C19orf43, CIAPIN1, CORO1C, EIF4A2, GOLPH3, NUBP1, PTPN6, SNRPD3, TWF1, HOMER1, MCFD2, NTRK1, CEP135, LENG1, OPTN, TARSL2, GCC2, OFD1, PA2G4, TRAP1, SND1, UBE2N, CYLD, STYX, COX15, DLD, PDHA1, BRCA1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FOXA1_AIMP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FOXA1_AIMP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneFOXA1C0033578Prostatic Neoplasms2CTD_human
HgeneFOXA1C0015695Fatty Liver1CTD_human
HgeneFOXA1C1458155Mammary Neoplasms1CTD_human