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Fusion gene ID: 13707 |
FusionGeneSummary for FNIP2_FAM159A |
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Fusion gene information | Fusion gene name: FNIP2_FAM159A | Fusion gene ID: 13707 | Hgene | Tgene | Gene symbol | FNIP2 | FAM159A | Gene ID | 57600 |
Gene name | folliculin interacting protein 2 | ||
Synonyms | FNIPL|MAPO1 | ||
Cytomap | 4q32.1 | ||
Type of gene | protein-coding | ||
Description | folliculin-interacting protein 2FNIP1-like proteinO6-methylguanine-induced apoptosis 1 protein | ||
Modification date | 20180519 | ||
UniProtAcc | Q9P278 | ||
Ensembl transtripts involved in fusion gene | ENST00000264433, ENST00000379346, ENST00000505445, | ENST00000517870, ENST00000401050, | |
Fusion gene scores | * DoF score | 9 X 5 X 6=270 | 2 X 1 X 2=4 |
# samples | 9 | 2 | |
** MAII score | log2(9/270*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: FNIP2 [Title/Abstract] AND FAM159A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | FNIP2 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 21209915 |
Hgene | FNIP2 | GO:0001932 | regulation of protein phosphorylation | 18663353 |
Hgene | FNIP2 | GO:0006468 | protein phosphorylation | 18663353 |
Hgene | FNIP2 | GO:0031334 | positive regulation of protein complex assembly | 25126726 |
Hgene | FNIP2 | GO:0033138 | positive regulation of peptidyl-serine phosphorylation | 19914239 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LGG | TCGA-HT-7475-01A | FNIP2 | chr4 | 159690471 | + | FAM159A | chr1 | 53108535 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000264433 | ENST00000517870 | FNIP2 | chr4 | 159690471 | + | FAM159A | chr1 | 53108535 | + |
5CDS-3UTR | ENST00000264433 | ENST00000401050 | FNIP2 | chr4 | 159690471 | + | FAM159A | chr1 | 53108535 | + |
intron-3CDS | ENST00000379346 | ENST00000517870 | FNIP2 | chr4 | 159690471 | + | FAM159A | chr1 | 53108535 | + |
intron-3UTR | ENST00000379346 | ENST00000401050 | FNIP2 | chr4 | 159690471 | + | FAM159A | chr1 | 53108535 | + |
intron-3CDS | ENST00000505445 | ENST00000517870 | FNIP2 | chr4 | 159690471 | + | FAM159A | chr1 | 53108535 | + |
intron-3UTR | ENST00000505445 | ENST00000401050 | FNIP2 | chr4 | 159690471 | + | FAM159A | chr1 | 53108535 | + |
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FusionProtFeatures for FNIP2_FAM159A |
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Hgene | Tgene |
FNIP2 | FAM159A |
Acts as a co-chaperone of HSP90AA1. Inhibits the ATPaseactivity of HSP90AA1 leading to reduction in its chaperoneactivity. Facilitates the binding of client protein FLCN toHSP90AA1 (PubMed:27353360). May play a role in the signaltransduction pathway of apoptosis induced by O6-methylguanine-mispaired lesions (By similarity). May be involved in energyand/or nutrient sensing through the AMPK and mTOR signalingpathways (PubMed:18403135). May regulate phosphorylation ofRPS6KB1 (PubMed:18663353). {ECO:0000250|UniProtKB:Q80TD3,ECO:0000269|PubMed:18403135, ECO:0000269|PubMed:18663353,ECO:0000269|PubMed:27353360}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >FAM159A | chr4:159690471 | chr1:53108535 | ENST00000517870 | + | 0 | 3 | 70_90 | 60 | 191 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000264433 | + | 1 | 17 | 242_265 | 35 | 1115 | Compositional bias | Note=Ser-rich |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000264433 | + | 1 | 17 | 95_116 | 35 | 1115 | Compositional bias | Note=Ser-rich |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000379346 | + | 1 | 17 | 242_265 | 0 | 1138 | Compositional bias | Note=Ser-rich |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000379346 | + | 1 | 17 | 95_116 | 0 | 1138 | Compositional bias | Note=Ser-rich |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000264433 | + | 1 | 17 | 1050_1105 | 35 | 1115 | Domain | dDENN FNIP1/2-type |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000264433 | + | 1 | 17 | 42_460 | 35 | 1115 | Domain | uDENN FNIP1/2-type |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000264433 | + | 1 | 17 | 468_1040 | 35 | 1115 | Domain | cDENN FNIP1/2-type |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000379346 | + | 1 | 17 | 1050_1105 | 0 | 1138 | Domain | dDENN FNIP1/2-type |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000379346 | + | 1 | 17 | 42_460 | 0 | 1138 | Domain | uDENN FNIP1/2-type |
Hgene | >FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000379346 | + | 1 | 17 | 468_1040 | 0 | 1138 | Domain | cDENN FNIP1/2-type |
Tgene | FAM159A | chr4:159690471 | chr1:53108535 | ENST00000517870 | + | 0 | 3 | 48_68 | 60 | 191 | Transmembrane | Helical |
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FusionGeneSequence for FNIP2_FAM159A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_FNIP2_ENST00000264433_chr4_159690471_+_FAM159A_ENST00000517870_chr1_53108535_+_166aa MAPTLLQKLFNKRGSSGSSAAASAQGRAPKEGPAFSIGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGPEEVSPD |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_FNIP2_ENST00000264433_chr4_159690471_+_FAM159A_ENST00000517870_chr1_53108535_+_498nt ATGGCCCCGACCCTGCTCCAGAAGCTCTTCAACAAAAGGGGCAGCAGCGGCAGCTCCGCGGCGGCGTCTGCCCAGGGCAGGGCTCCTAAG GAAGGACCCGCCTTTAGCATTGGCGCTCTCATAGGCCTGTCCGTAGCAGCAGTGGTTCTTCTCGCCTTCATTGTTACCGCCTGTGTGCTC TGCTACCTGTTCATCAGCTCTAAGCCCCACACAAAGTTGGACCTGGGCTTGAGCTTACAGACAGCAGGCCCTGAGGAGGTTTCTCCTGAC TGCCAAGGTGTGAACACAGGCATGGCGGCAGAAGTGCCAAAAGTGAGCCCTCTCCAGCAGAGTTACTCCTGCTTGAACCCGCAGCTGGAG AGCAATGAGGGGCAGGCTGTGAACTCCAAACGCCTCCTCCATCATTGCTTCATGGCCACAGTGACCACCAGTGACATTCCAGGCAGCCCT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_FNIP2_ENST00000264433_chr4_159690471_+_FAM159A_ENST00000517870_chr1_53108535_+_598nt GCGGCCGCCGCCCCCGGCTGCGCGCTGAGCCGCCGGCCCCCCGAGCGCCACGGCCGGAGCTGCGGCGGCGGCATCATGGCCCCGACCCTG CTCCAGAAGCTCTTCAACAAAAGGGGCAGCAGCGGCAGCTCCGCGGCGGCGTCTGCCCAGGGCAGGGCTCCTAAGGAAGGACCCGCCTTT AGCATTGGCGCTCTCATAGGCCTGTCCGTAGCAGCAGTGGTTCTTCTCGCCTTCATTGTTACCGCCTGTGTGCTCTGCTACCTGTTCATC AGCTCTAAGCCCCACACAAAGTTGGACCTGGGCTTGAGCTTACAGACAGCAGGCCCTGAGGAGGTTTCTCCTGACTGCCAAGGTGTGAAC ACAGGCATGGCGGCAGAAGTGCCAAAAGTGAGCCCTCTCCAGCAGAGTTACTCCTGCTTGAACCCGCAGCTGGAGAGCAATGAGGGGCAG GCTGTGAACTCCAAACGCCTCCTCCATCATTGCTTCATGGCCACAGTGACCACCAGTGACATTCCAGGCAGCCCTGAGGAAGCCTCTGTA |
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FusionGenePPI for FNIP2_FAM159A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
FNIP2 | FLCN, GABARAP, HSP90AA1, HSPA1B, STIP1, CDC37, PTGES3, NR3C1, CDK4, BRAF, FNIP2, FNIP1 | FAM159A |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000264433 | + | 1 | 17 | 544_911 | 35 | 1115 | PRKAA1 |
Hgene | FNIP2 | chr4:159690471 | chr1:53108535 | ENST00000379346 | + | 1 | 17 | 544_911 | 0 | 1138 | PRKAA1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FNIP2_FAM159A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FNIP2_FAM159A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |