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Fusion gene ID: 13438 |
FusionGeneSummary for FHDC1_ARFIP1 |
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Fusion gene information | Fusion gene name: FHDC1_ARFIP1 | Fusion gene ID: 13438 | Hgene | Tgene | Gene symbol | FHDC1 | ARFIP1 | Gene ID | 85462 | 27236 |
Gene name | FH2 domain containing 1 | ADP ribosylation factor interacting protein 1 | |
Synonyms | - | HSU52521 | |
Cytomap | 4q31.3 | 4q31.3 | |
Type of gene | protein-coding | protein-coding | |
Description | FH2 domain-containing protein 1 | arfaptin-1 | |
Modification date | 20180330 | 20180523 | |
UniProtAcc | Q9C0D6 | P53367 | |
Ensembl transtripts involved in fusion gene | ENST00000511601, ENST00000260008, | ENST00000451320, ENST00000429148, ENST00000353617, ENST00000405727, ENST00000356064, ENST00000511289, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 7 X 6 X 7=294 |
# samples | 2 | 10 | |
** MAII score | log2(2/1*10)=4.32192809488736 | log2(10/294*10)=-1.55581615506164 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: FHDC1 [Title/Abstract] AND ARFIP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ARFIP1 | GO:0006886 | intracellular protein transport | 12606037 |
Tgene | ARFIP1 | GO:0050708 | regulation of protein secretion | 12606037 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LUAD | TCGA-44-7670-01A | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
TCGA | RV | LUAD | TCGA-80-5611-01A | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000511601 | ENST00000451320 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000511601 | ENST00000429148 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000511601 | ENST00000353617 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000511601 | ENST00000405727 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000511601 | ENST00000356064 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
5CDS-intron | ENST00000511601 | ENST00000511289 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000260008 | ENST00000451320 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000260008 | ENST00000429148 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000260008 | ENST00000353617 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000260008 | ENST00000405727 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000260008 | ENST00000356064 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
5CDS-intron | ENST00000260008 | ENST00000511289 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153809285 | + |
Frame-shift | ENST00000511601 | ENST00000451320 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000511601 | ENST00000429148 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000511601 | ENST00000353617 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000511601 | ENST00000405727 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000511601 | ENST00000356064 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
5CDS-intron | ENST00000511601 | ENST00000511289 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000260008 | ENST00000451320 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000260008 | ENST00000429148 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000260008 | ENST00000353617 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000260008 | ENST00000405727 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000260008 | ENST00000356064 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
5CDS-intron | ENST00000260008 | ENST00000511289 | FHDC1 | chr4 | 153875471 | + | ARFIP1 | chr4 | 153831216 | + |
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FusionProtFeatures for FHDC1_ARFIP1 |
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Hgene | Tgene |
FHDC1 | ARFIP1 |
Putative target protein of ADP-ribosylation factor. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FHDC1_ARFIP1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for FHDC1_ARFIP1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
FHDC1 | ARFIP1 | ARF3, ARF1, ARF5, SLC2A4, ATP6V1C1, TBC1D15, TSNAX, YAP1, DNM1L, HIST1H4A, IDE, LUC7L2, PRMT3, PSMG3, SEC24A, SHMT2, STAT3, ARFIP2, PICK1, AACS, AKR1A1, ADSS, DPYSL2, G6PD, GART, HSD17B8, MVB12A, PFKM, PFKP, PPP3CA, PROSC, SARS, SEC24D, SHMT1, TSTA3, TXNDC9, USP14, ATOX1, ECH1, FLNB, LYPLA1, PAFAH1B2, PDCD6, PGM2L1, QDPR, STIP1, TBCA, DYNLT1, TMEM17, TMEM216, CDC5L, CDH1, CLPB, HSPA8, HSPBP1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FHDC1_ARFIP1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FHDC1_ARFIP1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |