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Fusion gene ID: 13433 |
FusionGeneSummary for FGG_SLC47A1 |
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Fusion gene information | Fusion gene name: FGG_SLC47A1 | Fusion gene ID: 13433 | Hgene | Tgene | Gene symbol | FGG | SLC47A1 | Gene ID | 2266 | 55244 |
Gene name | fibrinogen gamma chain | solute carrier family 47 member 1 | |
Synonyms | - | MATE1 | |
Cytomap | 4q32.1 | 17p11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | fibrinogen gamma chainfibrinogen, gamma polypeptidetesticular tissue protein Li 70 | multidrug and toxin extrusion protein 1MATE-1hMATE-1multidrug and toxin extrusion 1solute carrier family 47 (multidrug and toxin extrusion), member 1 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | P02679 | Q96FL8 | |
Ensembl transtripts involved in fusion gene | ENST00000404648, ENST00000405164, ENST00000336098, ENST00000407946, | ENST00000584348, ENST00000571335, ENST00000436810, ENST00000542886, ENST00000457293, ENST00000270570, ENST00000575023, ENST00000395585, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 5 X 5 X 4=100 |
# samples | 4 | 6 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/100*10)=-0.736965594166206 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: FGG [Title/Abstract] AND SLC47A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | FGG | GO:0007160 | cell-matrix adhesion | 10903502 |
Hgene | FGG | GO:0031639 | plasminogen activation | 16846481 |
Hgene | FGG | GO:0034116 | positive regulation of heterotypic cell-cell adhesion | 8100742 |
Hgene | FGG | GO:0034622 | cellular protein-containing complex assembly | 8910396 |
Hgene | FGG | GO:0042730 | fibrinolysis | 16846481 |
Hgene | FGG | GO:0045907 | positive regulation of vasoconstriction | 15739255 |
Hgene | FGG | GO:0045921 | positive regulation of exocytosis | 19193866 |
Hgene | FGG | GO:0050714 | positive regulation of protein secretion | 19193866 |
Hgene | FGG | GO:0051592 | response to calcium ion | 6777381 |
Hgene | FGG | GO:0070374 | positive regulation of ERK1 and ERK2 cascade | 10903502|19193866 |
Hgene | FGG | GO:0070527 | platelet aggregation | 6281794 |
Hgene | FGG | GO:0072378 | blood coagulation, fibrin clot formation | 16846481 |
Hgene | FGG | GO:0090277 | positive regulation of peptide hormone secretion | 19193866 |
Hgene | FGG | GO:1902042 | negative regulation of extrinsic apoptotic signaling pathway via death domain receptors | 10903502 |
Hgene | FGG | GO:2000352 | negative regulation of endothelial cell apoptotic process | 10903502 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AV655197 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000404648 | ENST00000584348 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000404648 | ENST00000571335 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-3UTR | ENST00000404648 | ENST00000436810 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000404648 | ENST00000542886 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000404648 | ENST00000457293 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000404648 | ENST00000270570 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000404648 | ENST00000575023 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000404648 | ENST00000395585 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000405164 | ENST00000584348 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000405164 | ENST00000571335 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-3UTR | ENST00000405164 | ENST00000436810 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000405164 | ENST00000542886 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000405164 | ENST00000457293 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000405164 | ENST00000270570 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000405164 | ENST00000575023 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000405164 | ENST00000395585 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000336098 | ENST00000584348 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000336098 | ENST00000571335 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-3UTR | ENST00000336098 | ENST00000436810 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000336098 | ENST00000542886 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000336098 | ENST00000457293 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000336098 | ENST00000270570 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000336098 | ENST00000575023 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000336098 | ENST00000395585 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000407946 | ENST00000584348 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000407946 | ENST00000571335 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-3UTR | ENST00000407946 | ENST00000436810 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000407946 | ENST00000542886 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000407946 | ENST00000457293 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000407946 | ENST00000270570 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000407946 | ENST00000575023 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
intron-intron | ENST00000407946 | ENST00000395585 | FGG | chr4 | 155525480 | - | SLC47A1 | chr17 | 19480676 | + |
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FusionProtFeatures for FGG_SLC47A1 |
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Hgene | Tgene |
FGG | SLC47A1 |
Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide(NMN), metformin, creatinine, guanidine, procainamide, topotecan,estrone sulfate, acyclovir, ganciclovir and also the zwitterioniccephalosporin, cephalexin and cephradin. Seems to also play a rolein the uptake of oxaliplatin (a new platinum anticancer agent).Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium);a widely used herbicid. Responsible for the secretion of cationicdrugs across the brush border membranes.{ECO:0000269|PubMed:16330770, ECO:0000269|PubMed:16996621,ECO:0000269|PubMed:17495125, ECO:0000269|PubMed:17509534,ECO:0000269|PubMed:17582384}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FGG_SLC47A1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for FGG_SLC47A1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FGG_SLC47A1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | FGG | P02679 | DB00364 | Sucralfate | Fibrinogen gamma chain | small molecule | approved |
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RelatedDiseases for FGG_SLC47A1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | FGG | C0272350 | Dysfibrinogenemia, Congenital | 7 | ORPHANET;UNIPROT |
Hgene | FGG | C0022548 | Keloid | 1 | CTD_human |
Hgene | FGG | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Hgene | FGG | C2584774 | Congenital hypofibrinogenemia | 1 | ORPHANET;UNIPROT |
Tgene | SLC47A1 | C0022658 | Kidney Diseases | 1 | CTD_human |