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Fusion gene ID: 13206 |
FusionGeneSummary for FBXW11_RBM11 |
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Fusion gene information | Fusion gene name: FBXW11_RBM11 | Fusion gene ID: 13206 | Hgene | Tgene | Gene symbol | FBXW11 | RBM11 | Gene ID | 23291 | 54033 |
Gene name | F-box and WD repeat domain containing 11 | RNA binding motif protein 11 | |
Synonyms | BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos | - | |
Cytomap | 5q35.1 | 21q11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | F-box/WD repeat-containing protein 11F-box and WD repeats protein beta-TrCP2F-box and WD-40 domain protein 11F-box and WD-40 domain protein 1BF-box protein Fbw1bF-box/WD repeat-containing protein 1Bbeta-transducin repeat-containing protein 2homolog | splicing regulator RBM11putative RNA-binding protein 11 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9UKB1 | P57052 | |
Ensembl transtripts involved in fusion gene | ENST00000296933, ENST00000265094, ENST00000393802, ENST00000425623, ENST00000522891, | ENST00000468643, ENST00000400577, | |
Fusion gene scores | * DoF score | 5 X 2 X 4=40 | 3 X 2 X 3=18 |
# samples | 5 | 5 | |
** MAII score | log2(5/40*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/18*10)=1.47393118833241 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: FBXW11 [Title/Abstract] AND RBM11 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | FBXW11 | GO:0000209 | protein polyubiquitination | 20347421 |
Hgene | FBXW11 | GO:0016567 | protein ubiquitination | 16885022 |
Hgene | FBXW11 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 20347421 |
Hgene | FBXW11 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | 20347421 |
Tgene | RBM11 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | 21984414 |
Tgene | RBM11 | GO:0034599 | cellular response to oxidative stress | 21984414 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-D3-A8GN-06A | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000296933 | ENST00000468643 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
5CDS-3UTR | ENST00000296933 | ENST00000400577 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
5CDS-3UTR | ENST00000265094 | ENST00000468643 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
5CDS-3UTR | ENST00000265094 | ENST00000400577 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
5CDS-3UTR | ENST00000393802 | ENST00000468643 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
5CDS-3UTR | ENST00000393802 | ENST00000400577 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
intron-3UTR | ENST00000425623 | ENST00000468643 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
intron-3UTR | ENST00000425623 | ENST00000400577 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
intron-3UTR | ENST00000522891 | ENST00000468643 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
intron-3UTR | ENST00000522891 | ENST00000400577 | FBXW11 | chr5 | 171433462 | - | RBM11 | chr21 | 15593418 | + |
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FusionProtFeatures for FBXW11_RBM11 |
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Hgene | Tgene |
FBXW11 | RBM11 |
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediatesthe ubiquitination and subsequent proteasomal degradation oftarget proteins. Probably recognizes and binds to phosphorylatedtarget proteins. SCF(FBXW11) mediates the ubiquitination ofphosphorylated CTNNB1 and participates in Wnt signaling.SCF(FBXW11) mediates the ubiquitination of phosphorylated NFKBIA,which degradation frees the associated NFKB1 to translocate intothe nucleus and to activate transcription. SCF(FBXW11) mediatesthe ubiquitination of IFNAR1. SCF(FBXW11) mediates theubiquitination of CEP68; this is required for centriole separationduring mitosis (PubMed:25503564). Involved in the oxidativestress-induced a ubiquitin-mediated decrease in RCAN1. Mediatesthe degradation of CDC25A induced by ionizing radiation in cellsprogressing through S phase and thus may function in the intra-S-phase checkpoint. Has an essential role in the control of theclock-dependent transcription via degradation of phosphorylatedPER1 and phosphorylated PER2. SCF(FBXW11) mediates theubiquitination of CYTH1, and probably CYTH2 (PubMed:29420262).{ECO:0000269|PubMed:10321728, ECO:0000269|PubMed:10437795,ECO:0000269|PubMed:10644755, ECO:0000269|PubMed:10648623,ECO:0000269|PubMed:14532120, ECO:0000269|PubMed:14603323,ECO:0000269|PubMed:15917222, ECO:0000269|PubMed:18575781,ECO:0000269|PubMed:19966869, ECO:0000269|PubMed:20347421,ECO:0000269|PubMed:25503564, ECO:0000269|PubMed:29420262}. (Microbial infection) Target of human immunodeficiencyvirus type 1 (HIV-1) protein VPU to polyubiquitinate and depleteBST2 from cells and antagonize its antiviral action.{ECO:0000269|PubMed:19730691}. | Tissue-specific splicing factor with potentialimplication in the regulation of alternative splicing duringneuron and germ cell differentiation. Antagonizes SRSF1-mediatedBCL-X splicing. May affect the choice of alternative 5' splicesites by binding to specific sequences in exons and antagonizingthe SR protein SRSF1. {ECO:0000269|PubMed:21984414}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FBXW11_RBM11 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for FBXW11_RBM11 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
FBXW11 | RPRM, FBXW11, SKP1, CUL1, BTRC, NFKBIA, AMER1, CDC25B, HIVEP1, HIVEP2, MYO10, NRD1, TFAP4, OGT, TUBGCP3, NUDC, CLPX, ATG4B, USP37, SUN2, ARIH1, PDCD4, ZRANB1, USP47, KHDRBS2, CLSPN, TRIM21, WEE1, CTNNB1, PER1, CDC25A, IFNAR1, PRLR, TNF, RBX1, CASP3, ATF4, DEPTOR, FAF1, MDM2, YAP1, KDR, EEF2K, CALML5, REST, COPS5, NEDD8, RCAN1, IRAK1, BCL2L11, BTG1, BTG2, SIPA1L1, FBXO5, FANCM, NFKB1, NFKB2, HSP90AA1, VCP, GHR, NUAK1, NUAK2, CDC34, UBE2D3, TRIM9, BHLHE40, RAP1GAP, DOCK1, DAP3, STK3, STK4, TBC1D4, RAPGEF2, GBF1, YWHAE, COPS7A, RELA, MAP1S, FLCN, PPP1R15B, ZNF704, TACC1, EZH2, LPIN2, SUZ12, NCKAP5L, PFDN4, CNOT7, VAPA, CHD1, LRCH4, TUBGCP6, DENND4C, HBP1, MAST2, ACBD5, FNIP1, HCFC1, MAST3, RASSF3, AXIN1, CTNNA1, KDM5B, MAX, TANC1, ZNF395, KEAP1, EML5, CNOT1, TIAM1, MTSS1, MTSS1L, FOXN2, AXIN2, VANGL1, AEBP2, ELMO2, USP54, C19orf26, TUBGCP4, CACHD1, PFDN5, UBE4B, NFE2L2, BOP1, LPIN1, GADD45GIP1, TFAM, ILF3, PTCD3, CLTC, DHX9, PABPC4, ZNF326, BORA, HNRNPU, SKP1P2, RASSF1, AATF, APC, C11orf84, CLPP, EIF4B, FAM120A, HNRNPA0, HNRNPA1, HNRNPA2B1, HNRNPA3, HNRNPAB, HNRNPD, HNRNPH1, HNRNPH2, HNRNPH3, HNRNPR, HNRNPUL2, HNRNPDL, KPNA2, MRPL13, MRPL19, MRPL23, MRPL4, MRPL49, MRPS18A, MRPS22, MRPS23, MRPS27, MRPS28, MRPS34, MRPS9, MYCBP, NAT10, PLEKHH2, PPM1A, RBM19, RPL5, RPS10, RPS28, RPSA, SYNCRIP, UBE2R2, YWHAB, YWHAZ, ZFR, CSTF2T, CTNNA2, FLNA, FLNC, GGNBP2, IRS2, MAP1B, PUS1, UBAP2L, YWHAG, BHLHE41, PPP1CC, PPP2R5E, CSNK1E, PPP2R1B, PRKACA, GSK3B, PRMT8, DLD, TSC22D4, WWTR1, WBP1, SPANXN3, FAM219A, ZBTB46, WWC1, GTF2IRD1, CASC5, GLI3, PER2, AKAP13, GTF2I, LRCH2, SUPT16H, PRRC2A, HUWE1, CHAF1B, SBF1, DOCK7, AMBRA1, DNAJC7, CDK5, RBM5, GEMIN5, ZIC2, HLTF, PRPSAP1, MXI1, PTPN13, MAPK8IP2, NFE2L1, SIK2, NUP50, NAMPT, FAM193B, CHD8, EML4, UBL7, DYNC1H1, NAV1, HECTD1, FOXG1, PABPC1, FUS, FOXC1, THRAP3, PTCD1, DNAJB14, RANBP2, NOL11, NUP153, RPAP3, BAG3, TSEN34, BCOR, MOV10, FKBP4, PUM1, HNRNPUL1, AKAP8L, SSH1, GDAP2, KIF20A, SIPA1L2, TP53, TATDN2, YTHDC2, RBMX, PFAS, ADAR, AKAP8, DCAF8, WARS, SMG7, KIAA0355, PEX1, PLCH1, EIF4E2, HELZ, FLII, MTMR1, ZNF281, LARS2, BAG4, DDX3X, CCT8, BAG5, MATR3, POLR1A, HERC3, MTERF3, UBA1, UBE2G2, EIF4ENIF1, GALK1, RAE1, POLE, MRE11A, CRY2, EIF3D, WDR60, WDTC1, AARS2, RPUSD3, CASP7, FAM83H, SPATA5, EPRS, RBM10, ZKSCAN1, SF3B2, SPIRE1, SYBU, MCM4, WDR36, HJURP, PIK3C2A, PIGX, SBF2, UTP14A, DNAJB4, LLGL1, STK11IP, WIZ, ATP5B, DUSP11, MLF2, TRIM32, KHDRBS3, SON, SF3B1, PPAT, KHDRBS1, VPS33A, ZNF644, RTCB, LRPPRC, IFT140, ISYNA1, RNF115, PSMC4, ARMC6, WDR62, DCAF7, LONP2, WDR11, CCT6A, ELAVL1, APP, ERCC6L, NACA, HNRNPF, YBX1, DKC1, SHMT2, AUP1, PDCL3, RNASEH2A, SPATA5L1, PRPF39, MARCKS, UBR5, IFI16, UPF1, WDR12, TRAF7, TWISTNB, TRIOBP, ZC3H18, PLK4, STIL, NFKBIB, UHRF1, RBMXL1, PLEKHG5, LSP1, SH3BP5L, AHCYL2, GPR161, IL17RD, YTHDC1, FOXN3, DNAJB5, SPATA20, PRICKLE3, ISY1, CNOT11, TRUB2, MRPL57, APBA2, EED, QKI, COBL, RALY, MZT2B, ELAVL4, HNRNPC, NOP9, NGRN, MCPH1 | RBM11 | RHOXF2, PCBP1, LYN, GABPB1, SNRPC, QKI, ZNF774, SF3B2, SKIV2L2, USP7, SLC4A1AP, ZCCHC8, TTC33, APP, MED4, DAZAP2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FBXW11_RBM11 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FBXW11_RBM11 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |