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Fusion gene ID: 12985 |
FusionGeneSummary for FAT1_NTRK3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: FAT1_NTRK3 | Fusion gene ID: 12985 | Hgene | Tgene | Gene symbol | FAT1 | NTRK3 | Gene ID | 2195 | 4916 |
| Gene name | FAT atypical cadherin 1 | neurotrophic receptor tyrosine kinase 3 | |
| Synonyms | CDHF7|CDHR8|FAT|ME5|hFat1 | GP145-TrkC|TRKC|gp145(trkC) | |
| Cytomap | 4q35.2 | 15q25.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protocadherin Fat 1FAT tumor suppressor 1cadherin ME5cadherin family member 7cadherin-related family member 8cadherin-related tumor suppressor homologprotein fat homolog | NT-3 growth factor receptorETS related protein-neurotrophic receptor tyrosine kinase fusion proteinETV6-NTRK3 fusionneurotrophic tyrosine kinase, receptor, type 3tyrosine kinase receptor C | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q14517 | Q16288 | |
| Ensembl transtripts involved in fusion gene | ENST00000441802, ENST00000512347, | ENST00000394480, ENST00000557856, ENST00000357724, ENST00000355254, ENST00000360948, ENST00000542733, ENST00000558676, ENST00000317501, ENST00000558306, ENST00000540489, | |
| Fusion gene scores | * DoF score | 10 X 10 X 7=700 | 9 X 7 X 9=567 |
| # samples | 13 | 20 | |
| ** MAII score | log2(13/700*10)=-2.42884329880387 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(20/567*10)=-1.5033487351675 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: FAT1 [Title/Abstract] AND NTRK3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | NTRK3 | GO:0000187 | activation of MAPK activity | 23027130 |
| Tgene | NTRK3 | GO:0001933 | negative regulation of protein phosphorylation | 23027130 |
| Tgene | NTRK3 | GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | 23027130 |
| Tgene | NTRK3 | GO:0008284 | positive regulation of cell proliferation | 23027130 |
| Tgene | NTRK3 | GO:0010628 | positive regulation of gene expression | 23027130 |
| Tgene | NTRK3 | GO:0030335 | positive regulation of cell migration | 23027130 |
| Tgene | NTRK3 | GO:0032148 | activation of protein kinase B activity | 23027130 |
| Tgene | NTRK3 | GO:0033138 | positive regulation of peptidyl-serine phosphorylation | 23027130 |
| Tgene | NTRK3 | GO:0050927 | positive regulation of positive chemotaxis | 23027130 |
| Tgene | NTRK3 | GO:0090630 | activation of GTPase activity | 23027130 |
| Tgene | NTRK3 | GO:2000251 | positive regulation of actin cytoskeleton reorganization | 23027130 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | CESC | TCGA-HM-A3JK-01A | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000441802 | ENST00000394480 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| Frame-shift | ENST00000441802 | ENST00000557856 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| Frame-shift | ENST00000441802 | ENST00000357724 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| Frame-shift | ENST00000441802 | ENST00000355254 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| Frame-shift | ENST00000441802 | ENST00000360948 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| Frame-shift | ENST00000441802 | ENST00000542733 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| Frame-shift | ENST00000441802 | ENST00000558676 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| Frame-shift | ENST00000441802 | ENST00000317501 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| 5CDS-intron | ENST00000441802 | ENST00000558306 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| 5CDS-intron | ENST00000441802 | ENST00000540489 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000394480 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000557856 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000357724 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000355254 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000360948 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000542733 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000558676 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-3CDS | ENST00000512347 | ENST00000317501 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-intron | ENST00000512347 | ENST00000558306 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
| intron-intron | ENST00000512347 | ENST00000540489 | FAT1 | chr4 | 187627717 | - | NTRK3 | chr15 | 88680792 | - |
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FusionProtFeatures for FAT1_NTRK3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| FAT1 | NTRK3 |
| Plays an essential role for cellular polarization,directed cell migration and modulating cell-cell contact.{ECO:0000250}. | Receptor tyrosine kinase involved in nervous system andprobably heart development. Upon binding of its ligandNTF3/neurotrophin-3, NTRK3 autophosphorylates and activatesdifferent signaling pathways, including the phosphatidylinositol3-kinase/AKT and the MAPK pathways, that control cell survival anddifferentiation. {ECO:0000269|PubMed:25196463}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FAT1_NTRK3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for FAT1_NTRK3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| FAT1 | HDAC6, NUB1, UBC, NOS2, VASP, AIRE, ILK, RPS6KA2, KLK11, TAZ, NXPH2, TRAC, SUSD4, DNASE2B, CALR3, VEGFB, CD96, LIPH, GPHA2, C2orf48, CLK1, EZH2, NIPSNAP1, SH3RF1, TRAF4, NOXA1, ND1, SORBS2, IGLL1, PSG8, XAGE1B, PDGFB, SLAMF1, GML, IFNE, DKKL1, SIRT6, BRINP3, ST8SIA4 | NTRK3 | NTF3, FRS2, SHC1, PLCG1, SQSTM1, PTPN1, APP, HSP90AA1, IRAK3, TNK2, NTRK1, SH3BP4, PTPRS, MYADM, C1GALT1, GNB2, C6orf120, MTOR, LGALS1, PTCD2, TMEM11, PAG1, EFR3A, TBC1D24, GNB4, TMEM192, INTS7, DENND4A, FAM171A2, KIAA0391, EPHA2, ATP7B, CXCR4, ACAD10, HRAS, EHD4, RPTOR, HEATR6, SLC39A11 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FAT1_NTRK3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FAT1_NTRK3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | FAT1 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
| Hgene | FAT1 | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
| Hgene | FAT1 | C0017636 | Glioblastoma | 1 | CTD_human |
| Hgene | FAT1 | C0018671 | Head and Neck Neoplasms | 1 | CTD_human |
| Hgene | FAT1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Hgene | FAT1 | C0036095 | Salivary Gland Neoplasms | 1 | CTD_human |
| Hgene | FAT1 | C0279626 | Squamous cell carcinoma of esophagus | 1 | CTD_human |
| Tgene | NTRK3 | C0036341 | Schizophrenia | 3 | PSYGENET |
| Tgene | NTRK3 | C0041696 | Unipolar Depression | 2 | PSYGENET |
| Tgene | NTRK3 | C1269683 | Major Depressive Disorder | 2 | PSYGENET |
| Tgene | NTRK3 | C0014175 | Endometriosis | 1 | CTD_human |
| Tgene | NTRK3 | C0017638 | Glioma | 1 | CTD_human |
| Tgene | NTRK3 | C0038220 | Status Epilepticus | 1 | CTD_human |
| Tgene | NTRK3 | C0525045 | Mood Disorders | 1 | PSYGENET |
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