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Fusion gene ID: 12804 |
FusionGeneSummary for FAM47E_TMEM184B |
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Fusion gene information | Fusion gene name: FAM47E_TMEM184B | Fusion gene ID: 12804 | Hgene | Tgene | Gene symbol | FAM47E | TMEM184B | Gene ID | 100129583 | 25829 |
Gene name | family with sequence similarity 47 member E | transmembrane protein 184B | |
Synonyms | - | C22orf5|FM08|HS5O6A|HSPC256 | |
Cytomap | 4q21.1 | 22q13.1 | |
Type of gene | protein-coding | protein-coding | |
Description | protein FAM47E | transmembrane protein 184Bputative MAPK-activating protein FM08 | |
Modification date | 20180329 | 20180523 | |
UniProtAcc | Q6ZV65 | Q9Y519 | |
Ensembl transtripts involved in fusion gene | ENST00000510197, ENST00000339906, ENST00000515604, ENST00000424749, ENST00000515589, | ENST00000361906, ENST00000361684, ENST00000504337, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 6 X 5 X 7=210 |
# samples | 1 | 8 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(8/210*10)=-1.39231742277876 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: FAM47E [Title/Abstract] AND TMEM184B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-24-1928-01A | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000510197 | ENST00000361906 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-5UTR | ENST00000510197 | ENST00000361684 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-intron | ENST00000510197 | ENST00000504337 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-5UTR | ENST00000339906 | ENST00000361906 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-5UTR | ENST00000339906 | ENST00000361684 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-intron | ENST00000339906 | ENST00000504337 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-5UTR | ENST00000515604 | ENST00000361906 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-5UTR | ENST00000515604 | ENST00000361684 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-intron | ENST00000515604 | ENST00000504337 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-5UTR | ENST00000424749 | ENST00000361906 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-5UTR | ENST00000424749 | ENST00000361684 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
5CDS-intron | ENST00000424749 | ENST00000504337 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
intron-5UTR | ENST00000515589 | ENST00000361906 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
intron-5UTR | ENST00000515589 | ENST00000361684 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
intron-intron | ENST00000515589 | ENST00000504337 | FAM47E | chr4 | 77184996 | + | TMEM184B | chr22 | 38644025 | - |
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FusionProtFeatures for FAM47E_TMEM184B |
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Hgene | Tgene |
FAM47E | TMEM184B |
May activate the MAP kinase signaling pathway.{ECO:0000269|PubMed:12761501}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FAM47E_TMEM184B |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for FAM47E_TMEM184B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
FAM47E | TMEM184B | LPAR6, ERGIC3, SNIP1, REN, CLASRP, CCDC9, ACIN1, INPPL1, TIMM23, FPR2, GPR21, C17orf85, SLC22A9, CLEC2D, YTHDF1, ZFYVE27, PDCD1, ABCG8, BBS4 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FAM47E_TMEM184B |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FAM47E_TMEM184B |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | TMEM184B | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |