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Fusion gene ID: 12678 |
FusionGeneSummary for FAM189A1_GABRG3 |
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Fusion gene information | Fusion gene name: FAM189A1_GABRG3 | Fusion gene ID: 12678 | Hgene | Tgene | Gene symbol | FAM189A1 | GABRG3 | Gene ID | 23359 | 2567 |
Gene name | family with sequence similarity 189 member A1 | gamma-aminobutyric acid type A receptor gamma3 subunit | |
Synonyms | TMEM228 | - | |
Cytomap | 15q13.1 | 15q12 | |
Type of gene | protein-coding | protein-coding | |
Description | protein FAM189A1transmembrane protein 228 | gamma-aminobutyric acid receptor subunit gamma-3GABA(A) receptor subunit gamma-3GABA(G) receptor, gamma 3gamma-aminobutyric acid (GABA) A receptor, gamma 3 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | O60320 | Q99928 | |
Ensembl transtripts involved in fusion gene | ENST00000261275, ENST00000560050, | ENST00000333743, ENST00000555083, ENST00000554786, | |
Fusion gene scores | * DoF score | 1 X 2 X 1=2 | 2 X 2 X 2=8 |
# samples | 1 | 2 | |
** MAII score | log2(1/2*10)=2.32192809488736 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: FAM189A1 [Title/Abstract] AND GABRG3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-FD-A43P-01A | FAM189A1 | chr15 | 29544572 | - | GABRG3 | chr15 | 27571956 | + |
TCGA | LD | BLCA | TCGA-FD-A43P-01A | FAM189A1 | chr15 | 29488634 | - | GABRG3 | chr15 | 27571956 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000261275 | ENST00000333743 | FAM189A1 | chr15 | 29544572 | - | GABRG3 | chr15 | 27571956 | + |
In-frame | ENST00000261275 | ENST00000555083 | FAM189A1 | chr15 | 29544572 | - | GABRG3 | chr15 | 27571956 | + |
5CDS-intron | ENST00000261275 | ENST00000554786 | FAM189A1 | chr15 | 29544572 | - | GABRG3 | chr15 | 27571956 | + |
intron-3CDS | ENST00000560050 | ENST00000333743 | FAM189A1 | chr15 | 29544572 | - | GABRG3 | chr15 | 27571956 | + |
intron-3CDS | ENST00000560050 | ENST00000555083 | FAM189A1 | chr15 | 29544572 | - | GABRG3 | chr15 | 27571956 | + |
intron-intron | ENST00000560050 | ENST00000554786 | FAM189A1 | chr15 | 29544572 | - | GABRG3 | chr15 | 27571956 | + |
In-frame | ENST00000261275 | ENST00000333743 | FAM189A1 | chr15 | 29488634 | - | GABRG3 | chr15 | 27571956 | + |
In-frame | ENST00000261275 | ENST00000555083 | FAM189A1 | chr15 | 29488634 | - | GABRG3 | chr15 | 27571956 | + |
5CDS-intron | ENST00000261275 | ENST00000554786 | FAM189A1 | chr15 | 29488634 | - | GABRG3 | chr15 | 27571956 | + |
intron-3CDS | ENST00000560050 | ENST00000333743 | FAM189A1 | chr15 | 29488634 | - | GABRG3 | chr15 | 27571956 | + |
intron-3CDS | ENST00000560050 | ENST00000555083 | FAM189A1 | chr15 | 29488634 | - | GABRG3 | chr15 | 27571956 | + |
intron-intron | ENST00000560050 | ENST00000554786 | FAM189A1 | chr15 | 29488634 | - | GABRG3 | chr15 | 27571956 | + |
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FusionProtFeatures for FAM189A1_GABRG3 |
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Hgene | Tgene |
FAM189A1 | GABRG3 |
GABA, the major inhibitory neurotransmitter in thevertebrate brain, mediates neuronal inhibition by binding to theGABA/benzodiazepine receptor and opening an integral chloridechannel. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | FAM189A1 | chr15:29488634 | chr15:27571956 | ENST00000261275 | - | 4 | 11 | 31_51 | 174 | 540 | Transmembrane | Helical |
Hgene | FAM189A1 | chr15:29488634 | chr15:27571956 | ENST00000261275 | - | 4 | 11 | 65_85 | 174 | 540 | Transmembrane | Helical |
Hgene | FAM189A1 | chr15:29488634 | chr15:27571956 | ENST00000261275 | - | 4 | 11 | 89_109 | 174 | 540 | Transmembrane | Helical |
Hgene | FAM189A1 | chr15:29544572 | chr15:27571956 | ENST00000261275 | - | 3 | 11 | 31_51 | 129 | 540 | Transmembrane | Helical |
Hgene | FAM189A1 | chr15:29544572 | chr15:27571956 | ENST00000261275 | - | 3 | 11 | 65_85 | 129 | 540 | Transmembrane | Helical |
Hgene | FAM189A1 | chr15:29544572 | chr15:27571956 | ENST00000261275 | - | 3 | 11 | 89_109 | 129 | 540 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 338_443 | 90 | 468 | Topological domain | Cytoplasmic |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 338_443 | 90 | 254 | Topological domain | Cytoplasmic |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 338_443 | 90 | 468 | Topological domain | Cytoplasmic |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 338_443 | 90 | 254 | Topological domain | Cytoplasmic |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 255_277 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 281_303 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 315_337 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 444_467 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 255_277 | 90 | 254 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 281_303 | 90 | 254 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 315_337 | 90 | 254 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 444_467 | 90 | 254 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 255_277 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 281_303 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 315_337 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 444_467 | 90 | 468 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 255_277 | 90 | 254 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 281_303 | 90 | 254 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 315_337 | 90 | 254 | Transmembrane | Helical |
Tgene | >GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 444_467 | 90 | 254 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >FAM189A1 | chr15:29488634 | chr15:27571956 | ENST00000261275 | - | 4 | 11 | 242_391 | 174 | 540 | Compositional bias | Note=Pro-rich |
Hgene | >FAM189A1 | chr15:29544572 | chr15:27571956 | ENST00000261275 | - | 3 | 11 | 242_391 | 129 | 540 | Compositional bias | Note=Pro-rich |
Hgene | >FAM189A1 | chr15:29488634 | chr15:27571956 | ENST00000261275 | - | 4 | 11 | 176_196 | 174 | 540 | Transmembrane | Helical |
Hgene | >FAM189A1 | chr15:29544572 | chr15:27571956 | ENST00000261275 | - | 3 | 11 | 176_196 | 129 | 540 | Transmembrane | Helical |
Tgene | GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 18_254 | 90 | 468 | Topological domain | Extracellular |
Tgene | GABRG3 | chr15:29488634 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 18_254 | 90 | 254 | Topological domain | Extracellular |
Tgene | GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000333743 | + | 2 | 10 | 18_254 | 90 | 468 | Topological domain | Extracellular |
Tgene | GABRG3 | chr15:29544572 | chr15:27571956 | ENST00000555083 | + | 2 | 6 | 18_254 | 90 | 254 | Topological domain | Extracellular |
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FusionGeneSequence for FAM189A1_GABRG3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_FAM189A1_ENST00000261275_chr15_29544572_-_GABRG3_ENST00000333743_chr15_27571956_+_507aa MPPAGGPRAPRPAALPRSLSRLRECPGRSRIVLALGATQMALGCLIVAVSFAALALTTSARVRHSCPFWAGFSVLLSGLIGVVSWKRPLS LVITFFMLLSAVCVMLNLAGSILSCQNAQLVNSLEGCQLEYQIDIFFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEA HWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTE IVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVT VCFLFVFAALMEYATLNYYSSCRKPTTTKKTTSLLHPDSSRWIPERISLQAPSNYSLLDMRPPPTAMITLNNSVYWQEFEDTCVYECLDG >In-frame_FAM189A1_ENST00000261275_chr15_29544572_-_GABRG3_ENST00000555083_chr15_27571956_+_293aa MPPAGGPRAPRPAALPRSLSRLRECPGRSRIVLALGATQMALGCLIVAVSFAALALTTSARVRHSCPFWAGFSVLLSGLIGVVSWKRPLS LVITFFMLLSAVCVMLNLAGSILSCQNAQLVNSLEGCQLEYQIDIFFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEA HWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTE >In-frame_FAM189A1_ENST00000261275_chr15_29488634_-_GABRG3_ENST00000333743_chr15_27571956_+_552aa MPPAGGPRAPRPAALPRSLSRLRECPGRSRIVLALGATQMALGCLIVAVSFAALALTTSARVRHSCPFWAGFSVLLSGLIGVVSWKRPLS LVITFFMLLSAVCVMLNLAGSILSCQNAQLVNSLEGCQLIKFDSVEVCVCCELQHQSSGCSNLGETLKLNPLQENCNAVRLTLKEYQIDI FFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCP LIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFW IKKDATPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSSCRKPTTTKKTTSLLHPDSSRWIPE RISLQAPSNYSLLDMRPPPTAMITLNNSVYWQEFEDTCVYECLDGKDCQSFFCCYEECKSGSWRKGRIHIDILELDSYSRVFFPTSFLLF >In-frame_FAM189A1_ENST00000261275_chr15_29488634_-_GABRG3_ENST00000555083_chr15_27571956_+_338aa MPPAGGPRAPRPAALPRSLSRLRECPGRSRIVLALGATQMALGCLIVAVSFAALALTTSARVRHSCPFWAGFSVLLSGLIGVVSWKRPLS LVITFFMLLSAVCVMLNLAGSILSCQNAQLVNSLEGCQLIKFDSVEVCVCCELQHQSSGCSNLGETLKLNPLQENCNAVRLTLKEYQIDI FFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCP |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_FAM189A1_ENST00000261275_chr15_29544572_-_GABRG3_ENST00000333743_chr15_27571956_+_1521nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGGAATACCAAATTGACATATTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGC ACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATCTGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCT CACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGACGGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGC CAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCGCTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTAT AGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGGCGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAA ATCGTGACAACGTCTGCAGGTGATTATGTTGTCATGACTATATATTTTGAATTGAGTAGAAGAATGGGATACTTCACCATTCAGACATAC ATTCCCTGTATACTGACTGTGGTTTTATCCTGGGTGTCATTTTGGATCAAAAAAGATGCTACGCCAGCAAGAACAGCATTAGGCATCACC ACGGTGCTGACCATGACCACCCTGAGCACCATCGCCAGGAAGTCCTTGCCACGCGTGTCCTACGTGACCGCCATGGACCTTTTTGTGACC GTGTGCTTCCTGTTTGTCTTCGCCGCGCTGATGGAGTATGCCACCCTCAACTACTATTCCAGCTGTAGAAAACCAACCACCACGAAGAAG ACAACATCGTTACTACATCCAGATTCCTCAAGATGGATTCCTGAGCGAATAAGCCTACAAGCCCCTTCCAACTATTCCCTCCTGGACATG AGGCCACCACCAACTGCGATGATCACTTTAAACAATTCCGTTTACTGGCAGGAATTTGAAGATACCTGTGTCTATGAGTGTCTGGATGGC AAAGACTGTCAGAGCTTCTTCTGCTGCTATGAAGAATGTAAATCAGGATCCTGGAGGAAAGGGCGTATTCACATAGACATCTTGGAGCTG >In-frame_FAM189A1_ENST00000261275_chr15_29544572_-_GABRG3_ENST00000555083_chr15_27571956_+_879nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGGAATACCAAATTGACATATTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGC ACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATCTGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCT CACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGACGGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGC CAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCGCTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTAT AGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGGCGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAA >In-frame_FAM189A1_ENST00000261275_chr15_29488634_-_GABRG3_ENST00000333743_chr15_27571956_+_1656nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGATTAAGTTTGACAGTGTGGAGGTGTGTGTCTGCTGTGAGCTGCAGCACCAGTCGTCCGGCTGC AGCAACCTCGGGGAGACGCTGAAGCTGAACCCGCTGCAGGAGAACTGCAACGCTGTGAGGCTGACCTTGAAGGAATACCAAATTGACATA TTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGCACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATC TGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCTCACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGAC GGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGCCAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCG CTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTATAGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGG CGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAAATCGTGACAACGTCTGCAGGTGATTATGTTGTCATGACTATATAT TTTGAATTGAGTAGAAGAATGGGATACTTCACCATTCAGACATACATTCCCTGTATACTGACTGTGGTTTTATCCTGGGTGTCATTTTGG ATCAAAAAAGATGCTACGCCAGCAAGAACAGCATTAGGCATCACCACGGTGCTGACCATGACCACCCTGAGCACCATCGCCAGGAAGTCC TTGCCACGCGTGTCCTACGTGACCGCCATGGACCTTTTTGTGACCGTGTGCTTCCTGTTTGTCTTCGCCGCGCTGATGGAGTATGCCACC CTCAACTACTATTCCAGCTGTAGAAAACCAACCACCACGAAGAAGACAACATCGTTACTACATCCAGATTCCTCAAGATGGATTCCTGAG CGAATAAGCCTACAAGCCCCTTCCAACTATTCCCTCCTGGACATGAGGCCACCACCAACTGCGATGATCACTTTAAACAATTCCGTTTAC TGGCAGGAATTTGAAGATACCTGTGTCTATGAGTGTCTGGATGGCAAAGACTGTCAGAGCTTCTTCTGCTGCTATGAAGAATGTAAATCA GGATCCTGGAGGAAAGGGCGTATTCACATAGACATCTTGGAGCTGGACTCGTACTCCCGGGTCTTTTTCCCCACGTCCTTCCTGCTCTTT >In-frame_FAM189A1_ENST00000261275_chr15_29488634_-_GABRG3_ENST00000555083_chr15_27571956_+_1014nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGATTAAGTTTGACAGTGTGGAGGTGTGTGTCTGCTGTGAGCTGCAGCACCAGTCGTCCGGCTGC AGCAACCTCGGGGAGACGCTGAAGCTGAACCCGCTGCAGGAGAACTGCAACGCTGTGAGGCTGACCTTGAAGGAATACCAAATTGACATA TTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGCACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATC TGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCTCACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGAC GGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGCCAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCG CTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTATAGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGG CGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAAATCGTGACAACGTCTGCAGGTAGGAATTTACTGAAAGAGGCACAG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_FAM189A1_ENST00000261275_chr15_29544572_-_GABRG3_ENST00000333743_chr15_27571956_+_1867nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGGAATACCAAATTGACATATTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGC ACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATCTGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCT CACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGACGGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGC CAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCGCTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTAT AGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGGCGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAA ATCGTGACAACGTCTGCAGGTGATTATGTTGTCATGACTATATATTTTGAATTGAGTAGAAGAATGGGATACTTCACCATTCAGACATAC ATTCCCTGTATACTGACTGTGGTTTTATCCTGGGTGTCATTTTGGATCAAAAAAGATGCTACGCCAGCAAGAACAGCATTAGGCATCACC ACGGTGCTGACCATGACCACCCTGAGCACCATCGCCAGGAAGTCCTTGCCACGCGTGTCCTACGTGACCGCCATGGACCTTTTTGTGACC GTGTGCTTCCTGTTTGTCTTCGCCGCGCTGATGGAGTATGCCACCCTCAACTACTATTCCAGCTGTAGAAAACCAACCACCACGAAGAAG ACAACATCGTTACTACATCCAGATTCCTCAAGATGGATTCCTGAGCGAATAAGCCTACAAGCCCCTTCCAACTATTCCCTCCTGGACATG AGGCCACCACCAACTGCGATGATCACTTTAAACAATTCCGTTTACTGGCAGGAATTTGAAGATACCTGTGTCTATGAGTGTCTGGATGGC AAAGACTGTCAGAGCTTCTTCTGCTGCTATGAAGAATGTAAATCAGGATCCTGGAGGAAAGGGCGTATTCACATAGACATCTTGGAGCTG GACTCGTACTCCCGGGTCTTTTTCCCCACGTCCTTCCTGCTCTTTAACCTGGTCTACTGGGTTGGATACCTGTATCTCTAAGTGTTGCTC AGAGTGAAGAGTGAAGAGCATTTGGTACACACTTGACCTTCTGTCGTCCCCAGACCAGTAGTGACCAATCGGGAGTAGCAAGGAAGGACA CTGCCCAGTGTATCTTGTTATAAATGACCTTTCAGCAACACAGGAAGTACCCAGCAAAGGTTTCTATTATGTATTTTACACACACACATA CATACACACACACAGCTAATTGAGTTTTAAAGTAATATTCTTGCTAATCCCTACTGAATTGTAGCTTGGTGTTGTTTCTGAATGGTTTTT >In-frame_FAM189A1_ENST00000261275_chr15_29544572_-_GABRG3_ENST00000555083_chr15_27571956_+_1379nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGGAATACCAAATTGACATATTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGC ACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATCTGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCT CACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGACGGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGC CAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCGCTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTAT AGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGGCGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAA ATCGTGACAACGTCTGCAGGTAGGAATTTACTGAAAGAGGCACAGCTCTCAAAAGCCAGAGAGGCCTAAGGCCATATGTAGTCATATCCT TAATGTACAAGCCTTTTGGGCAACCATGATACATAAGTGATATTTGAGACAAAACAAGTGATTCAAAGTGAAACTATGTTTTCATGTTTT AATTGGTATGGGAGAGGGATGTTAGAAATAATTCATATTTTTGAATCCAGGCTGTGTTTGCATAATGTCTATAAACCTAGCTATAAACTT AACCTAACTCATTACTGACCATATTTACATAAACCAATTTTGCTGATGGGGAGAGTTCTGCAAATTTCCACGTACATAAGAAGAATCAAA TATTATTGAGAATCCACACATAAAAGAAGCTGGTGTGATATGTCCTTTGAGTTTCAATTGCTTTTATTTACTCTAAGTTTTATCTTTAAC TTTGAGTTTCTTTTTCAATGATTGAAAGTAATTACCTACCAATTTGATTTTATGAAGTGATCATTATATGCATATTCAAAATCCTGTAAT >In-frame_FAM189A1_ENST00000261275_chr15_29488634_-_GABRG3_ENST00000333743_chr15_27571956_+_2002nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGATTAAGTTTGACAGTGTGGAGGTGTGTGTCTGCTGTGAGCTGCAGCACCAGTCGTCCGGCTGC AGCAACCTCGGGGAGACGCTGAAGCTGAACCCGCTGCAGGAGAACTGCAACGCTGTGAGGCTGACCTTGAAGGAATACCAAATTGACATA TTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGCACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATC TGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCTCACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGAC GGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGCCAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCG CTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTATAGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGG CGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAAATCGTGACAACGTCTGCAGGTGATTATGTTGTCATGACTATATAT TTTGAATTGAGTAGAAGAATGGGATACTTCACCATTCAGACATACATTCCCTGTATACTGACTGTGGTTTTATCCTGGGTGTCATTTTGG ATCAAAAAAGATGCTACGCCAGCAAGAACAGCATTAGGCATCACCACGGTGCTGACCATGACCACCCTGAGCACCATCGCCAGGAAGTCC TTGCCACGCGTGTCCTACGTGACCGCCATGGACCTTTTTGTGACCGTGTGCTTCCTGTTTGTCTTCGCCGCGCTGATGGAGTATGCCACC CTCAACTACTATTCCAGCTGTAGAAAACCAACCACCACGAAGAAGACAACATCGTTACTACATCCAGATTCCTCAAGATGGATTCCTGAG CGAATAAGCCTACAAGCCCCTTCCAACTATTCCCTCCTGGACATGAGGCCACCACCAACTGCGATGATCACTTTAAACAATTCCGTTTAC TGGCAGGAATTTGAAGATACCTGTGTCTATGAGTGTCTGGATGGCAAAGACTGTCAGAGCTTCTTCTGCTGCTATGAAGAATGTAAATCA GGATCCTGGAGGAAAGGGCGTATTCACATAGACATCTTGGAGCTGGACTCGTACTCCCGGGTCTTTTTCCCCACGTCCTTCCTGCTCTTT AACCTGGTCTACTGGGTTGGATACCTGTATCTCTAAGTGTTGCTCAGAGTGAAGAGTGAAGAGCATTTGGTACACACTTGACCTTCTGTC GTCCCCAGACCAGTAGTGACCAATCGGGAGTAGCAAGGAAGGACACTGCCCAGTGTATCTTGTTATAAATGACCTTTCAGCAACACAGGA AGTACCCAGCAAAGGTTTCTATTATGTATTTTACACACACACATACATACACACACACAGCTAATTGAGTTTTAAAGTAATATTCTTGCT AATCCCTACTGAATTGTAGCTTGGTGTTGTTTCTGAATGGTTTTTGGATATTGGAAGCAGCCGCTGATTACCCTTGCAAAGAAATCTGTA >In-frame_FAM189A1_ENST00000261275_chr15_29488634_-_GABRG3_ENST00000555083_chr15_27571956_+_1514nt ATGCCTCCGGCCGGCGGCCCCCGAGCGCCGCGTCCCGCCGCGCTGCCCCGCAGCCTGTCCCGCCTGCGCGAGTGCCCGGGCCGCTCCCGC ATCGTGCTGGCGCTCGGGGCCACGCAGATGGCGCTCGGATGCCTCATCGTGGCAGTCAGCTTCGCCGCGCTGGCGCTCACCACCTCGGCC CGCGTCCGCCACTCCTGCCCCTTCTGGGCAGGCTTCTCGGTGCTGCTGTCGGGACTCATAGGTGTCGTCTCCTGGAAGAGGCCTCTCTCC CTTGTGATAACCTTTTTCATGCTGCTTTCTGCAGTGTGTGTAATGCTGAATTTGGCTGGTTCAATTCTCTCTTGTCAGAATGCTCAGCTA GTCAACTCCCTAGAAGGCTGCCAGTTGATTAAGTTTGACAGTGTGGAGGTGTGTGTCTGCTGTGAGCTGCAGCACCAGTCGTCCGGCTGC AGCAACCTCGGGGAGACGCTGAAGCTGAACCCGCTGCAGGAGAACTGCAACGCTGTGAGGCTGACCTTGAAGGAATACCAAATTGACATA TTTTTTGCTCAGACCTGGACAGATAGTCGCCTTCGATTCAACAGCACAATGAAAATTCTTACTCTGAACAGCAACATGGTGGGGTTAATC TGGATCCCAGACACCATCTTCCGCAATTCTAAAACCGCAGAGGCTCACTGGATCACCACACCCAATCAGCTCCTCCGGATTTGGAATGAC GGGAAAATCCTTTACACTTTGAGGCTCACCATCAATGCTGAGTGCCAGCTGCAGCTGCACAACTTCCCCATGGACGAACACTCCTGCCCG CTGATTTTCTCCAGCTATGGCTATCCCAAAGAAGAAATGATTTATAGATGGAGAAAAAATTCAGTGGAGGCAGCTGACCAGAAATCATGG CGGCTTTATCAGTTTGACTTCATGGGCCTCAGAAACACCACAGAAATCGTGACAACGTCTGCAGGTAGGAATTTACTGAAAGAGGCACAG CTCTCAAAAGCCAGAGAGGCCTAAGGCCATATGTAGTCATATCCTTAATGTACAAGCCTTTTGGGCAACCATGATACATAAGTGATATTT GAGACAAAACAAGTGATTCAAAGTGAAACTATGTTTTCATGTTTTAATTGGTATGGGAGAGGGATGTTAGAAATAATTCATATTTTTGAA TCCAGGCTGTGTTTGCATAATGTCTATAAACCTAGCTATAAACTTAACCTAACTCATTACTGACCATATTTACATAAACCAATTTTGCTG ATGGGGAGAGTTCTGCAAATTTCCACGTACATAAGAAGAATCAAATATTATTGAGAATCCACACATAAAAGAAGCTGGTGTGATATGTCC TTTGAGTTTCAATTGCTTTTATTTACTCTAAGTTTTATCTTTAACTTTGAGTTTCTTTTTCAATGATTGAAAGTAATTACCTACCAATTT |
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FusionGenePPI for FAM189A1_GABRG3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
FAM189A1 | CLK1 | GABRG3 | TP53 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FAM189A1_GABRG3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | GABRG3 | Q99928 | DB00546 | Adinazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Tgene | GABRG3 | Q99928 | DB00842 | Oxazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Tgene | GABRG3 | Q99928 | DB00898 | Ethanol | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Tgene | GABRG3 | Q99928 | DB01594 | Cinolazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Tgene | GABRG3 | Q99928 | DB01595 | Nitrazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Tgene | GABRG3 | Q99928 | DB00683 | Midazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Tgene | GABRG3 | Q99928 | DB01215 | Estazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Tgene | GABRG3 | Q99928 | DB01559 | Clotiazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Tgene | GABRG3 | Q99928 | DB01567 | Fludiazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Tgene | GABRG3 | Q99928 | DB01588 | Prazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Tgene | GABRG3 | Q99928 | DB01589 | Quazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Tgene | GABRG3 | Q99928 | DB00690 | Flurazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|investigational |
Tgene | GABRG3 | Q99928 | DB01558 | Bromazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|investigational |
Tgene | GABRG3 | Q99928 | DB00829 | Diazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|investigational|vet_approved |
Tgene | GABRG3 | Q99928 | DB00801 | Halazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|withdrawn |
Tgene | GABRG3 | Q99928 | DB00231 | Temazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|investigational |
Tgene | GABRG3 | Q99928 | DB00897 | Triazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|investigational |
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RelatedDiseases for FAM189A1_GABRG3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | GABRG3 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
Tgene | GABRG3 | C3711376 | Isodicentric Chromosome 15 Syndrome | 1 | CTD_human |