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Fusion gene ID: 12580 |
FusionGeneSummary for FAM13C_S100P |
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Fusion gene information | Fusion gene name: FAM13C_S100P | Fusion gene ID: 12580 | Hgene | Tgene | Gene symbol | FAM13C | S100P | Gene ID | 220965 | 6286 |
Gene name | family with sequence similarity 13 member C | S100 calcium binding protein P | |
Synonyms | FAM13C1 | MIG9 | |
Cytomap | 10q21.1 | 4p16.1 | |
Type of gene | protein-coding | protein-coding | |
Description | protein FAM13Cfamily with sequence similarity 13, member C1 | protein S100-Pmigration-inducing gene 9 proteinprotein S100-E | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q8NE31 | P25815 | |
Ensembl transtripts involved in fusion gene | ENST00000373867, ENST00000373868, ENST00000442566, ENST00000277705, ENST00000419214, ENST00000468840, ENST00000435852, ENST00000422313, ENST00000510215, | ENST00000296370, ENST00000513778, | |
Fusion gene scores | * DoF score | 3 X 2 X 4=24 | 1 X 1 X 2=2 |
# samples | 4 | 2 | |
** MAII score | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/2*10)=3.32192809488736 | |
Context | PubMed: FAM13C [Title/Abstract] AND S100P [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | CESC | TCGA-DS-A1OB-01A | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
TCGA | RV | PRAD | TCGA-EJ-8474-01A | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000373867 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000373867 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
Frame-shift | ENST00000373868 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000373868 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
Frame-shift | ENST00000442566 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000442566 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
Frame-shift | ENST00000277705 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000277705 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
Frame-shift | ENST00000419214 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000419214 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
In-frame | ENST00000468840 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000468840 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
Frame-shift | ENST00000435852 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000435852 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
Frame-shift | ENST00000422313 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
5CDS-3UTR | ENST00000422313 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
intron-3CDS | ENST00000510215 | ENST00000296370 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
intron-3UTR | ENST00000510215 | ENST00000513778 | FAM13C | chr10 | 61112030 | - | S100P | chr4 | 6698620 | + |
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FusionProtFeatures for FAM13C_S100P |
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Hgene | Tgene |
FAM13C | S100P |
May function as calcium sensor and contribute tocellular calcium signaling. In a calcium-dependent manner,functions by interacting with other proteins, such as EZR andPPP5C, and indirectly plays a role in physiological processes likethe formation of microvilli in epithelial cells. May stimulatecell proliferation in an autocrine manner via activation of thereceptor for activated glycation end products (RAGE).{ECO:0000269|PubMed:14617629, ECO:0000269|PubMed:19111582,ECO:0000269|PubMed:22399290}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FAM13C_S100P |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_75aa >In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_75aa |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_225nt ATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGAGTGGAAAAGACAAG GATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGTTCGTGGCTGCAATC >In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_225nt ATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGAGTGGAAAAGACAAG GATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGTTCGTGGCTGCAATC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_906nt AAAATTGGTAGGAGACATGTGGAAGAAAGCAAGTCTCCCGGGTATTTCAGCACTTCGGCAGAAACACTGGGGCATTCTCATTGCCAGCCT CGGGGGGTGGCTGGCACAAAGAGCCCAAGATTAAACGCGGCGCCTGGGCTGGCGAGGTCGGGGTCGTGTGGTAACTCTCCAGGTGCTCCT CGCTGGATCCCGGGGTCCCAGCCCCGCCGCCGCGCCCCGCCCAGCTCTGTCCCCGCAGCCTCGCGGGCTGCCGGGCTTTGTGGTTCGCCC GTGCCGCTGGGCCCCTGCTGGGGGTGTCGTTACGAGCATGTGCAGACAGCAGCCCAAGCCTTCAGGATAATTCCTTCAGCAGCACCACTG TAACAGAGTGTGACGAAGATCCAGTCTCTCTACATGAAGACCAGACTGATTGCTCCAGTCTCAGAGATGAAAACAATAAAGAGAACTACC CCGACGCAGGGGCTCTGGTAGAAGAGCACGCGCCGCCCTCTTGGGAGCCGCAGCAGCAGAATGTAGAGGCGACCGTGCTGGTGGACAGCG TATTGCGACCCAGCATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGA GTGGAAAAGACAAGGATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGT TCGTGGCTGCAATCACGTCTGCCTGTCACAAGTACTTTGAGAAGGCAGGACTCAAATGATGCCCTGGAGATGTCACAGATTCCTGGCAGA GCCATGGTCCCAGGCTTCCCAAAAGTGTTTGTTGGCAATTATTCCCCTAGGCTGAGCCTGCTCATGTACCTCTGATTAATAAATGCTTAT >In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_906nt AAAATTGGTAGGAGACATGTGGAAGAAAGCAAGTCTCCCGGGTATTTCAGCACTTCGGCAGAAACACTGGGGCATTCTCATTGCCAGCCT CGGGGGGTGGCTGGCACAAAGAGCCCAAGATTAAACGCGGCGCCTGGGCTGGCGAGGTCGGGGTCGTGTGGTAACTCTCCAGGTGCTCCT CGCTGGATCCCGGGGTCCCAGCCCCGCCGCCGCGCCCCGCCCAGCTCTGTCCCCGCAGCCTCGCGGGCTGCCGGGCTTTGTGGTTCGCCC GTGCCGCTGGGCCCCTGCTGGGGGTGTCGTTACGAGCATGTGCAGACAGCAGCCCAAGCCTTCAGGATAATTCCTTCAGCAGCACCACTG TAACAGAGTGTGACGAAGATCCAGTCTCTCTACATGAAGACCAGACTGATTGCTCCAGTCTCAGAGATGAAAACAATAAAGAGAACTACC CCGACGCAGGGGCTCTGGTAGAAGAGCACGCGCCGCCCTCTTGGGAGCCGCAGCAGCAGAATGTAGAGGCGACCGTGCTGGTGGACAGCG TATTGCGACCCAGCATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGA GTGGAAAAGACAAGGATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGT TCGTGGCTGCAATCACGTCTGCCTGTCACAAGTACTTTGAGAAGGCAGGACTCAAATGATGCCCTGGAGATGTCACAGATTCCTGGCAGA GCCATGGTCCCAGGCTTCCCAAAAGTGTTTGTTGGCAATTATTCCCCTAGGCTGAGCCTGCTCATGTACCTCTGATTAATAAATGCTTAT |
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FusionGenePPI for FAM13C_S100P |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
FAM13C | CCDC85B, DVL3, PHC2, KIF2A, MEOX2, MTUS2, TFIP11, SDCBP2, MED4, HMBOX1, CEP70, FAM13C, CCDC172, TUBA3C, AHCYL2, AHCYL1, PDZRN3 | S100P | S100P, S100A1, AGER, EZR, S100Z, TERF2IP, SUGT1, LRRC45, PPM1G, SNRPF, IGBP1, PSMD4, STUB1, BAG3, S100B, TFIP11, NUSAP1, CDH1, CCDC103, TBC1D22B, ZIC1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FAM13C_S100P |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | S100P | P25815 | DB01003 | Cromoglicic acid | Protein S100-P | small molecule | approved |
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RelatedDiseases for FAM13C_S100P |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | S100P | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |