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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 12580

FusionGeneSummary for FAM13C_S100P

check button Fusion gene summary
Fusion gene informationFusion gene name: FAM13C_S100P
Fusion gene ID: 12580
HgeneTgene
Gene symbol

FAM13C

S100P

Gene ID

220965

6286

Gene namefamily with sequence similarity 13 member CS100 calcium binding protein P
SynonymsFAM13C1MIG9
Cytomap

10q21.1

4p16.1

Type of geneprotein-codingprotein-coding
Descriptionprotein FAM13Cfamily with sequence similarity 13, member C1protein S100-Pmigration-inducing gene 9 proteinprotein S100-E
Modification date2018051920180522
UniProtAcc

Q8NE31

P25815

Ensembl transtripts involved in fusion geneENST00000373867, ENST00000373868, 
ENST00000442566, ENST00000277705, 
ENST00000419214, ENST00000468840, 
ENST00000435852, ENST00000422313, 
ENST00000510215, 
ENST00000296370, 
ENST00000513778, 
Fusion gene scores* DoF score3 X 2 X 4=241 X 1 X 2=2
# samples 42
** MAII scorelog2(4/24*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(2/2*10)=3.32192809488736
Context

PubMed: FAM13C [Title/Abstract] AND S100P [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDCESCTCGA-DS-A1OB-01AFAM13Cchr10

61112030

-S100Pchr4

6698620

+
TCGARVPRADTCGA-EJ-8474-01AFAM13Cchr10

61112030

-S100Pchr4

6698620

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000373867ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000373867ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
Frame-shiftENST00000373868ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000373868ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
Frame-shiftENST00000442566ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000442566ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
Frame-shiftENST00000277705ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000277705ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
Frame-shiftENST00000419214ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000419214ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
In-frameENST00000468840ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000468840ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
Frame-shiftENST00000435852ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000435852ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
Frame-shiftENST00000422313ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
5CDS-3UTRENST00000422313ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+
intron-3CDSENST00000510215ENST00000296370FAM13Cchr10

61112030

-S100Pchr4

6698620

+
intron-3UTRENST00000510215ENST00000513778FAM13Cchr10

61112030

-S100Pchr4

6698620

+

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FusionProtFeatures for FAM13C_S100P


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FAM13C

Q8NE31

S100P

P25815

May function as calcium sensor and contribute tocellular calcium signaling. In a calcium-dependent manner,functions by interacting with other proteins, such as EZR andPPP5C, and indirectly plays a role in physiological processes likethe formation of microvilli in epithelial cells. May stimulatecell proliferation in an autocrine manner via activation of thereceptor for activated glycation end products (RAGE).{ECO:0000269|PubMed:14617629, ECO:0000269|PubMed:19111582,ECO:0000269|PubMed:22399290}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for FAM13C_S100P


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_75aa

>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_75aa


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_225nt
ATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGAGTGGAAAAGACAAG
GATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGTTCGTGGCTGCAATC

>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_225nt
ATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGAGTGGAAAAGACAAG
GATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGTTCGTGGCTGCAATC


* Fusion transcript sequences (Full-length transcript).
>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_906nt
AAAATTGGTAGGAGACATGTGGAAGAAAGCAAGTCTCCCGGGTATTTCAGCACTTCGGCAGAAACACTGGGGCATTCTCATTGCCAGCCT
CGGGGGGTGGCTGGCACAAAGAGCCCAAGATTAAACGCGGCGCCTGGGCTGGCGAGGTCGGGGTCGTGTGGTAACTCTCCAGGTGCTCCT
CGCTGGATCCCGGGGTCCCAGCCCCGCCGCCGCGCCCCGCCCAGCTCTGTCCCCGCAGCCTCGCGGGCTGCCGGGCTTTGTGGTTCGCCC
GTGCCGCTGGGCCCCTGCTGGGGGTGTCGTTACGAGCATGTGCAGACAGCAGCCCAAGCCTTCAGGATAATTCCTTCAGCAGCACCACTG
TAACAGAGTGTGACGAAGATCCAGTCTCTCTACATGAAGACCAGACTGATTGCTCCAGTCTCAGAGATGAAAACAATAAAGAGAACTACC
CCGACGCAGGGGCTCTGGTAGAAGAGCACGCGCCGCCCTCTTGGGAGCCGCAGCAGCAGAATGTAGAGGCGACCGTGCTGGTGGACAGCG
TATTGCGACCCAGCATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGA
GTGGAAAAGACAAGGATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGT
TCGTGGCTGCAATCACGTCTGCCTGTCACAAGTACTTTGAGAAGGCAGGACTCAAATGATGCCCTGGAGATGTCACAGATTCCTGGCAGA
GCCATGGTCCCAGGCTTCCCAAAAGTGTTTGTTGGCAATTATTCCCCTAGGCTGAGCCTGCTCATGTACCTCTGATTAATAAATGCTTAT

>In-frame_FAM13C_ENST00000468840_chr10_61112030_-_S100P_ENST00000296370_chr4_6698620_+_906nt
AAAATTGGTAGGAGACATGTGGAAGAAAGCAAGTCTCCCGGGTATTTCAGCACTTCGGCAGAAACACTGGGGCATTCTCATTGCCAGCCT
CGGGGGGTGGCTGGCACAAAGAGCCCAAGATTAAACGCGGCGCCTGGGCTGGCGAGGTCGGGGTCGTGTGGTAACTCTCCAGGTGCTCCT
CGCTGGATCCCGGGGTCCCAGCCCCGCCGCCGCGCCCCGCCCAGCTCTGTCCCCGCAGCCTCGCGGGCTGCCGGGCTTTGTGGTTCGCCC
GTGCCGCTGGGCCCCTGCTGGGGGTGTCGTTACGAGCATGTGCAGACAGCAGCCCAAGCCTTCAGGATAATTCCTTCAGCAGCACCACTG
TAACAGAGTGTGACGAAGATCCAGTCTCTCTACATGAAGACCAGACTGATTGCTCCAGTCTCAGAGATGAAAACAATAAAGAGAACTACC
CCGACGCAGGGGCTCTGGTAGAAGAGCACGCGCCGCCCTCTTGGGAGCCGCAGCAGCAGAATGTAGAGGCGACCGTGCTGGTGGACAGCG
TATTGCGACCCAGCATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGA
GTGGAAAAGACAAGGATGCCGTGGATAAATTGCTCAAGGACCTGGATGCCAATGGAGATGCCCAGGTGGACTTCAGTGAGTTCATAGTGT
TCGTGGCTGCAATCACGTCTGCCTGTCACAAGTACTTTGAGAAGGCAGGACTCAAATGATGCCCTGGAGATGTCACAGATTCCTGGCAGA
GCCATGGTCCCAGGCTTCCCAAAAGTGTTTGTTGGCAATTATTCCCCTAGGCTGAGCCTGCTCATGTACCTCTGATTAATAAATGCTTAT


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FusionGenePPI for FAM13C_S100P


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FAM13CCCDC85B, DVL3, PHC2, KIF2A, MEOX2, MTUS2, TFIP11, SDCBP2, MED4, HMBOX1, CEP70, FAM13C, CCDC172, TUBA3C, AHCYL2, AHCYL1, PDZRN3S100PS100P, S100A1, AGER, EZR, S100Z, TERF2IP, SUGT1, LRRC45, PPM1G, SNRPF, IGBP1, PSMD4, STUB1, BAG3, S100B, TFIP11, NUSAP1, CDH1, CCDC103, TBC1D22B, ZIC1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FAM13C_S100P


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneS100PP25815DB01003Cromoglicic acidProtein S100-Psmall moleculeapproved

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RelatedDiseases for FAM13C_S100P


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneS100PC0032460Polycystic Ovary Syndrome1CTD_human