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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 12026

FusionGeneSummary for ERI3_CMPK1

check button Fusion gene summary
Fusion gene informationFusion gene name: ERI3_CMPK1
Fusion gene ID: 12026
HgeneTgene
Gene symbol

ERI3

CMPK1

Gene ID

79033

51727

Gene nameERI1 exoribonuclease family member 3cytidine/uridine monophosphate kinase 1
SynonymsPINT1|PRNPIPCK|CMK|CMPK|UMK|UMP-CMPK|UMPK
Cytomap

1p34.1

1p33

Type of geneprotein-codingprotein-coding
DescriptionERI1 exoribonuclease 3enhanced RNAi three prime mRNA exonuclease homolog 3prion interactor 1prion protein-interacting proteinUMP-CMP kinaseUMP/CMP kinasecytidine monophosphate (UMP-CMP) kinase 1, cytosoliccytidylate kinasedCMP kinasedeoxycytidylate kinasenucleoside-diphosphate kinaseuridine monophosphate kinaseuridine monophosphate/cytidine monophosphate kinase
Modification date2018052320180519
UniProtAcc

O43414

P30085

Ensembl transtripts involved in fusion geneENST00000372259, ENST00000372257, 
ENST00000537474, ENST00000495828, 
ENST00000371873, ENST00000450808, 
ENST00000471289, 
Fusion gene scores* DoF score4 X 4 X 4=645 X 3 X 3=45
# samples 45
** MAII scorelog2(4/64*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/45*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: ERI3 [Title/Abstract] AND CMPK1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneCMPK1

GO:0006165

nucleoside diphosphate phosphorylation

23416111

TgeneCMPK1

GO:0009142

nucleoside triphosphate biosynthetic process

23416111


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-A7-A5ZV-01AERI3chr1

44820564

-CMPK1chr1

47834141

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000372259ENST00000371873ERI3chr1

44820564

-CMPK1chr1

47834141

+
intron-intronENST00000372259ENST00000450808ERI3chr1

44820564

-CMPK1chr1

47834141

+
intron-intronENST00000372259ENST00000471289ERI3chr1

44820564

-CMPK1chr1

47834141

+
In-frameENST00000372257ENST00000371873ERI3chr1

44820564

-CMPK1chr1

47834141

+
5CDS-intronENST00000372257ENST00000450808ERI3chr1

44820564

-CMPK1chr1

47834141

+
5CDS-intronENST00000372257ENST00000471289ERI3chr1

44820564

-CMPK1chr1

47834141

+
intron-3CDSENST00000537474ENST00000371873ERI3chr1

44820564

-CMPK1chr1

47834141

+
intron-intronENST00000537474ENST00000450808ERI3chr1

44820564

-CMPK1chr1

47834141

+
intron-intronENST00000537474ENST00000471289ERI3chr1

44820564

-CMPK1chr1

47834141

+
5UTR-3CDSENST00000495828ENST00000371873ERI3chr1

44820564

-CMPK1chr1

47834141

+
5UTR-intronENST00000495828ENST00000450808ERI3chr1

44820564

-CMPK1chr1

47834141

+
5UTR-intronENST00000495828ENST00000471289ERI3chr1

44820564

-CMPK1chr1

47834141

+

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FusionProtFeatures for ERI3_CMPK1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ERI3

O43414

CMPK1

P30085

Catalyzes the phosphorylation of pyrimidine nucleosidemonophosphates at the expense of ATP. Plays an important role inde novo pyrimidine nucleotide biosynthesis. Has preference for UMPand CMP as phosphate acceptors. Also displays broad nucleosidediphosphate kinase activity. {ECO:0000255|HAMAP-Rule:MF_03172,ECO:0000269|PubMed:10462544, ECO:0000269|PubMed:11912132,ECO:0000269|PubMed:23416111}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for ERI3_CMPK1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_ERI3_ENST00000372257_chr1_44820564_-_CMPK1_ENST00000371873_chr1_47834141_+_217aa
MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITIS
LLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTK


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_ERI3_ENST00000372257_chr1_44820564_-_CMPK1_ENST00000371873_chr1_47834141_+_651nt
ATGGCGACAGCCTCTCCCGCTGCTGACGGGGGGCGGGGGCGGCCCTGGGAAGGAGGGCTGGTCTCCTGGCCCCCCGCCCCTCCCCTTACT
CTCCCCTGGACTTGGATGGGCCCGAGTTGGGGGCAACACCCCGGGAAATATGGCTACACACACCTTTCTGCAGGAGAGCTGCTTCGTGAT
GAAAGGAAGAACCCAGATTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGT
TTATTAAAGAGGGAAATGGATCAGACAATGGCTGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGGTTTCCAAGAAATCAAGACAAC
CTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAACGA
TGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAG
CCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAAGTTTTTGATGAAGTTGTGCAG


* Fusion transcript sequences (Full-length transcript).
>In-frame_ERI3_ENST00000372257_chr1_44820564_-_CMPK1_ENST00000371873_chr1_47834141_+_2927nt
CCGGGAACGGGCGGTGGGGAGCGGGCGGAGCTGGCCCTGCCTCTGCCTGGCCGGCGCCGCAGTCGGCGCGGGCCGCGCCCGCCGCCGCCA
ACTGCCCTGAGCGCTTGCTGAGGCCGAGGGAGACGTCGGGGCCTGCACCTGGAGGGAGCCTGCCGCGCTGGCCCCGAGGAGGGGGCGTTG
CCATGGCGACAGCCTCTCCCGCTGCTGACGGGGGGCGGGGGCGGCCCTGGGAAGGAGGGCTGGTCTCCTGGCCCCCCGCCCCTCCCCTTA
CTCTCCCCTGGACTTGGATGGGCCCGAGTTGGGGGCAACACCCCGGGAAATATGGCTACACACACCTTTCTGCAGGAGAGCTGCTTCGTG
ATGAAAGGAAGAACCCAGATTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCA
GTTTATTAAAGAGGGAAATGGATCAGACAATGGCTGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGGTTTCCAAGAAATCAAGACA
ACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAAC
GATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAA
AGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAAGTTTTTGATGAAGTTGTGC
AGATTTTTGACAAGGAAGGCTAATTCTAAACCTGAAGGCATCCTTGAAATCATGCTTGAATATTGCTTTGATAGCTGCTATCATGACCCC
TTTTTAAGGCAATTCTAATCTTTCATAACTACATCTCAATTAGTGGCTGGAAAGTACATGGTAAAACAAAGTAAATTTTTTTATGTTCTT
TTTTTTGGTCACAGGAGTAGACAGTGAATTCAGGTTTAACTTCACCTTAGTTATGGTGCTCACCAAACGAAGGGTATCAGCTATTTTTTT
TAAAATTCAAAAAGAATATCCCTTTTATAGTTTGTGCCTTCTGTGAGCAAAACTTTTTAGTACGCGTATATATCCCTCTAGTAATCACAA
CATTTTAGGATTTAGGGATACCCGCTTCCTCTTTTTCTTGCAAGTTTTAAATTTCCAACCTTAAGTGAATTTGTGGACCAAATTTCAAAG
GAACTTTTTGTGTAGTCAGTTCTTGCACAATGTGTTTGGTAAACAAACTCAAAATGGATTCTTAGGAGCATTTTAGTGTTTATTAAATAA
CTGACCATTTGCTGTAGAAAGATGAGAAAACTTAAGCTTTGTTTTACTACAACTTGTACAAAGTTGTATGACAGGGCATATTCTTTGCTT
CCAAGATTTGGGTTGGGGGCACTAGGGGTTCAGAGCCTGGCAGAATTGTCAGCTTTAGTCTGACATAATCTAAGGGTATGGGGCAAGGAT
CACATCTAATGCTTGTGTTCCTTATACTCTATTATATAGTGTTATTCATGATTCAGCTGATCTTAACAAAATTCGTAGCAGTGGAACCTT
GAAATGCATGTGGCTAGATTTATGCTAAAATGATTCTCAGTTAGCATTTTAGTAACACTTCAAAGGTTTTTTTTTGTTTGTTTTCTAGAC
TTAATAAAAGCTTAGGATTAATTAGAAGAAGCAATCTAGTTAAATTTCCCATTTGTATTTTATTTTCTTGAATACTTTTTTCATAGTTAT
TTGTTTAAAAAGATTTAAAAATCATTGCACTTTGGTCAGAAAAATAATAAATATATCTTATAAATGTTTGATTCCCTTCCTTGCTATTTT
TATTCAGTAGATTTTTGTTTGGCATCATGTTGAAGCACCGAAAGATAAATGATTTTTAAAAGGCTATAGAGTCCAAAGGAATATTCTTTT
ACACCAATTCTTCCTTTAAAAATCTCTGAGGAATTTGTTTTCGCCTTACTTTTTTTTCTTCTGTCACAATGCTAAGTGGTATCCGAGGTT
CTTAATATGAGATTTAAAATCTTAAAATGTTTCTTATTTTCAGCACTTACATCATTTGGTACACAGGGTCAAATAGGGCAAATAATTTTG
TCTTTGTATAATAGATTTGATATTTAAAGTCACTGGAAATAGGACAAGTTAATGGATGTTTTTATATTTTAATAGAATCATTTATTTCTA
TGTGTTATGAAATTCACTTAATGATAAATTTTTCAACATACTTGCCATTAGAAAACAAAGTATTGCTAAGTACTATAACATATTGGCCAC
TAAAATTCATATTGAGATTATCTTGGTTTCTTGGAAGAGATAGGAATGAGTTCTTATCTAGTGTTGCAGGCCAGCAAATACAGAGGTGGT
TTAATCAAACAGCTCTAGTATGAAGCAAGAGTAAAGACTAAGGTTTCGAGAGCATTCCTACTCACATAAGTGAAGAAATCTGTCAGATAG
GAATCTAAATATTTATAGTGAGATTGTGAAAGCAACCTTAAAGTTTTGAAGAAGACTGATGAGACTAGGTGCTTTGCTTCCTTTCATCAG
GTATCTTTCTGTGGCATTTGAGAACAGAAACCAAGAAACATGGTAATTACTAAATTATGAGGCTTTGCTTTTTGTTTGCTTTTAAGTAGA
AAAACATGTTGGCAACATTGAGTTTTGGAGTTGATTGAGATAATATGACTTAACTAGTTTTGTCATTCCATTTGTTAAAGATACAGTCAC
CAAGAATGTTTTGAGTTTTTTGAAAGACCCCAATTTAAGCCTTGCTTATTTTTAAATTATTTCCATTCAGTGATGTTGGATGTATATCAG


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FusionGenePPI for ERI3_CMPK1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
ERI3TTK, CENPO, RAPGEF2, KCNJ5, CELF5, PSMD9, ARHGAP22CMPK1ELAVL1, MOV10, NXF1, TTC19, ACOT13, ETFA, ECE2, NIT2, TATDN1, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for ERI3_CMPK1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneCMPK1P30085DB00441GemcitabineUMP-CMP kinase {ECO:0000255|HAMAP-Rule:MF_03172}small moleculeapproved

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RelatedDiseases for ERI3_CMPK1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource