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Fusion gene ID: 11938 |
FusionGeneSummary for ERBB3_RPL30 |
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Fusion gene information | Fusion gene name: ERBB3_RPL30 | Fusion gene ID: 11938 | Hgene | Tgene | Gene symbol | ERBB3 | RPL30 | Gene ID | 2065 | 6156 |
Gene name | erb-b2 receptor tyrosine kinase 3 | ribosomal protein L30 | |
Synonyms | ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 | L30 | |
Cytomap | 12q13.2 | 8q22.2 | |
Type of gene | protein-coding | protein-coding | |
Description | receptor tyrosine-protein kinase erbB-3human epidermal growth factor receptor 3proto-oncogene-like protein c-ErbB-3tyrosine kinase-type cell surface receptor HER3v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 | 60S ribosomal protein L30large ribosomal subunit protein eL30 | |
Modification date | 20180527 | 20180523 | |
UniProtAcc | P21860 | P62888 | |
Ensembl transtripts involved in fusion gene | ENST00000267101, ENST00000450146, ENST00000415288, ENST00000553131, ENST00000411731, ENST00000549832, | ENST00000518164, ENST00000521291, ENST00000396070, ENST00000287038, ENST00000523172, | |
Fusion gene scores | * DoF score | 16 X 15 X 9=2160 | 10 X 7 X 5=350 |
# samples | 16 | 15 | |
** MAII score | log2(16/2160*10)=-3.75488750216347 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/350*10)=-1.22239242133645 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ERBB3 [Title/Abstract] AND RPL30 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ERBB3 | GO:0007162 | negative regulation of cell adhesion | 7556068 |
Hgene | ERBB3 | GO:0007165 | signal transduction | 10572067 |
Hgene | ERBB3 | GO:0009968 | negative regulation of signal transduction | 11389077 |
Hgene | ERBB3 | GO:0014065 | phosphatidylinositol 3-kinase signaling | 7556068 |
Hgene | ERBB3 | GO:0042127 | regulation of cell proliferation | 11389077 |
Hgene | ERBB3 | GO:0051048 | negative regulation of secretion | 10559227 |
Tgene | RPL30 | GO:0002181 | cytoplasmic translation | 25957688 |
Tgene | RPL30 | GO:0031640 | killing of cells of other organism | 15019208 |
Tgene | RPL30 | GO:0050829 | defense response to Gram-negative bacterium | 15019208 |
Tgene | RPL30 | GO:0061844 | antimicrobial humoral immune response mediated by antimicrobial peptide | 15019208 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-D3-A1Q1-06A | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000267101 | ENST00000518164 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000267101 | ENST00000521291 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000267101 | ENST00000396070 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000267101 | ENST00000287038 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000267101 | ENST00000523172 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000450146 | ENST00000518164 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000450146 | ENST00000521291 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000450146 | ENST00000396070 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000450146 | ENST00000287038 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000450146 | ENST00000523172 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000415288 | ENST00000518164 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000415288 | ENST00000521291 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000415288 | ENST00000396070 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000415288 | ENST00000287038 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000415288 | ENST00000523172 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000553131 | ENST00000518164 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000553131 | ENST00000521291 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000553131 | ENST00000396070 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000553131 | ENST00000287038 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000553131 | ENST00000523172 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000411731 | ENST00000518164 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000411731 | ENST00000521291 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000411731 | ENST00000396070 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000411731 | ENST00000287038 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
intron-intron | ENST00000411731 | ENST00000523172 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000549832 | ENST00000518164 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000549832 | ENST00000521291 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000549832 | ENST00000396070 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000549832 | ENST00000287038 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
5CDS-intron | ENST00000549832 | ENST00000523172 | ERBB3 | chr12 | 56497283 | + | RPL30 | chr8 | 99058697 | - |
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FusionProtFeatures for ERBB3_RPL30 |
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Hgene | Tgene |
ERBB3 | RPL30 |
Tyrosine-protein kinase that plays an essential role ascell surface receptor for neuregulins. Binds to neuregulin-1(NRG1) and is activated by it; ligand-binding increasesphosphorylation on tyrosine residues and promotes its associationwith the p85 subunit of phosphatidylinositol 3-kinase(PubMed:20682778). May also be activated by CSPG5(PubMed:15358134). {ECO:0000269|PubMed:15358134,ECO:0000269|PubMed:20682778}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ERBB3_RPL30 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ERBB3_RPL30 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ERBB3 | GRB2, PIK3R2, CSK, SHC1, CD82, RGS4, ODF2L, GRB7, PA2G4, EGF, RNF41, NRG1, PIK3R1, IL6ST, PTK6, EGFR, MUC1, NRG2, ERBB2, RPN1, EGR1, ZNF207, HDAC6, LRIG1, MDM2, AKT1, PTPN11, HSP90AA1, NCK2, JAK2, SH2D1A, DAB1, ABL1, HCK, FGFR1, SRC, NCK1, FER, PLCG1, RASA1, TXK, ABL2, ZAP70, SYK, CRK, CRKL, JAK3, VAV2, CHN2, ITK, RIN1, BCAR3, TENC1, TNS3, TNS4, SHC3, PIK3R3, VAV1, VAV3, DAPP1, SH2B3, NEDD4, HLA-DPA1, UQCR10, B3GALTL, PDF, TUBA4A, TUBB8, HLA-A, YBEY, SLC31A1, EIF1AX, SRPK2, HLA-B, SLC25A5, SLC25A6, AIFM1, ANXA2, AP1M2, ATP5A1, B2M, C1QBP, CANX, CDC37, DNAJB11, DNAJA1, TUFM, ERBB3, GFAP, HSPA5, HNRNPH1, HNRNPH2, HNRNPF, HSP90AB1, HSPA8, LGALS3BP, MASP1, PHLDA1, PIK3CA, PIK3CB, PTCD3, RAE1, RPL23, RPS27, RPS27A, RPS27L, MRPS14, MRPS17, MRPS23, MRPS27, MRPS28, S100A10, SSR1, TUBB, ACTA2, ACTB, ACTBL2, POTEKP, ACTC1, ACTG1, ACTG2, ACTA1, HBA1, HBB, HBD, HBE1, HBG1, HBG2, HNRNPH3, HSPA1A, LRPPRC, PON2, POTEE, POTEF, HNRNPA2B1, HNRNPAB, MRPS18B, MRPS22, MRPS25, MRPS26, MRPS34, TUBA1B, PCGF1, DPPA4, NANOG, POU5F1, EPN1, L1CAM, MET, NEDD4L, PTK2B, NDRG1, CDH1, PTPRH, UQCRH, PPM1A, PPM1B, PPM1F, PPM1K, PPM1M, ILKAP, PTPRR, PTPN6, PTPN7, PTPN12, PTPN20B, DUSP14, DUSP18, DUSP19, DUSP21, DUPD1, STYX, PTPDC1, PTEN, TPTE, MTMR1, MTMR2, MTMR6, MTMR8, MTMR9, MTMR10, CDC25C, EYA4, CSPG5, HGS | RPL30 | MAP3K1, NFKB2, POU5F1, MME, NOP56, NEDD4L, VHL, RAD21, ARRB2, SIRT7, CUL3, CUL4B, CDK2, CUL1, COPS5, CAND1, APP, RPS11, RPL4, RPL6, RPS13, RPL8, RPL10A, RPL12, RPL15, RPL18A, RPL19, RPL37A, RPL5, RPL7A, RPL7, RPS14, RPS15A, RPS24, RPS2, RPS5, RPS8, RPSA, RPL11, RPL18, RPS6, RPL31, RPS4X, RPS7, RPS9, RPS23, RPL23, RPL23A, RPL27, RPS3, RPL22, RPL36, RPL21, RPL13, RPL14, RPL10, RPS3A, RPLP0, RPL27A, RPS16, RPL35, RPS26, RPL38, EEF1A1, RPS29, RPS21, RPL37, NHP2L1, NOP58, HNRNPM, HNRNPU, RPLP0P6, NIFK, RPL10L, NOP2, BOP1, KAT5, PA2G4, FN1, VCAM1, IL7R, UBL4A, ITGA4, PAN2, IGSF8, ICAM1, CASP2, OAS1, MAP2K7, RPL13A, G0S2, FAM120B, ZFAND2A, USP14, WWOX, ZBTB1, AURKA, CEP250, CEP57, CEP76, TP53, VCP, PHF6, EED, UNK, EEF1A2, POLR1B, POLR3B, RPL24, RPL26, RPL26L1, RPL3, RPL34, RPL3L, RPLP1, RPS10, RPS12, RPS15, RPS19, RPS20, RPS25, RPS27, RPL9, RPLP2, RPS18, LOC101929876, FOSL2, C10orf12, LDHD, SKI, MCM2, RC3H1, HIST1H1C, HIST1H1T, RRP8, KIAA0020, RBM34, RBM28, NSA2, REXO4, ZC3HAV1, ZNF184, PPAN-P2RY11, WHSC1, PAK1IP1, FTSJ3, BRIX1, ZNF512, ZNF70, DDX24, ZNF354A, GTPBP4, CCDC137, DDX31, DDX27, GNL2, ZC3H10, ZFP62, PRDM15, EBNA1BP2, RPL32, GLYR1, ZNF22, DKC1, STAU1, NSUN4, RPF1, NIP7, RPF2, MAK16, IMP4, ZNF189, NMNAT1, CNBP, CENPN, DHX30, HP1BP3, TTF1, MYBBP1A, FCF1, RPL28, NLE1, ZNF771, ZNF668, ZSCAN25, ZNF574, TAF1A, LLPH, DDX10, PRKRA, ZNF142, DDX21, GZF1, LYAR, RPL7L1, PAPD5, SURF6, GPATCH4, RSL24D1, SMARCA5, DDX56, PTPN6, CYLD, INO80B, COX15, DLD, DLST, DNM1L, HSD17B10, PDHA1, SDHA, SOD1, VDAC1, FOXA1, TRIM25, BRCA1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ERBB3_RPL30 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ERBB3_RPL30 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ERBB3 | C0036341 | Schizophrenia | 3 | PSYGENET |
Hgene | ERBB3 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
Hgene | ERBB3 | C0011570 | Mental Depression | 1 | PSYGENET |
Hgene | ERBB3 | C0016978 | gallbladder neoplasm | 1 | CTD_human |
Hgene | ERBB3 | C0024121 | Lung Neoplasms | 1 | CTD_human |
Hgene | ERBB3 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Hgene | ERBB3 | C0041696 | Unipolar Depression | 1 | PSYGENET |
Hgene | ERBB3 | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
Hgene | ERBB3 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Hgene | ERBB3 | C2931822 | Nasopharyngeal carcinoma | 1 | CTD_human |