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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDiseases

Fusion gene ID: 1153

FusionGeneSummary for AGPAT9_COPS4

check button Fusion gene summary
Fusion gene informationFusion gene name: AGPAT9_COPS4
Fusion gene ID: 1153
HgeneTgene
Gene symbol

AGPAT9

COPS4

Gene ID

84803

51138

Gene nameglycerol-3-phosphate acyltransferase 3COP9 signalosome subunit 4
SynonymsAGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1CSN4|SGN4
Cytomap

4q21.23

4q21.22

Type of geneprotein-codingprotein-coding
Descriptionglycerol-3-phosphate acyltransferase 31-AGP acyltransferase 91-AGPAT 91-acyl-sn-glycerol-3-phosphate O-acyltransferase 101-acyl-sn-glycerol-3-phosphate O-acyltransferase 91-acylglycerol-3-phosphate O-acyltransferase 81-acylglycerol-3-phosphate O-acyCOP9 signalosome complex subunit 4COP9 constitutive photomorphogenic homolog subunit 4COP9 constitutive photomorphogenic-like protein subunit 4JAB1-containing signalosome subunit 4signalosome subunit 4testis tissue sperm-binding protein Li 42a
Modification date2018051920180523
UniProtAcc

Q9BT78

Ensembl transtripts involved in fusion geneENST00000395226, ENST00000264409, 
ENST00000509044, 
ENST00000509093, 
ENST00000264389, ENST00000503682, 
ENST00000511653, ENST00000511708, 
Fusion gene scores* DoF score1 X 1 X 1=13 X 3 X 3=27
# samples 13
** MAII scorelog2(1/1*10)=3.32192809488736log2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: AGPAT9 [Title/Abstract] AND COPS4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneAGPAT9

GO:0019432

triglyceride biosynthetic process

17170135

HgeneAGPAT9

GO:0032006

regulation of TOR signaling

17002884

TgeneCOPS4

GO:0000338

protein deneddylation

19141280


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSARCTCGA-K1-A6RV-01AAGPAT9chr4

84465755

+COPS4chr4

83987591

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000395226ENST00000509093AGPAT9chr4

84465755

+COPS4chr4

83987591

+
In-frameENST00000395226ENST00000264389AGPAT9chr4

84465755

+COPS4chr4

83987591

+
In-frameENST00000395226ENST00000503682AGPAT9chr4

84465755

+COPS4chr4

83987591

+
In-frameENST00000395226ENST00000511653AGPAT9chr4

84465755

+COPS4chr4

83987591

+
5CDS-intronENST00000395226ENST00000511708AGPAT9chr4

84465755

+COPS4chr4

83987591

+
In-frameENST00000264409ENST00000509093AGPAT9chr4

84465755

+COPS4chr4

83987591

+
In-frameENST00000264409ENST00000264389AGPAT9chr4

84465755

+COPS4chr4

83987591

+
In-frameENST00000264409ENST00000503682AGPAT9chr4

84465755

+COPS4chr4

83987591

+
In-frameENST00000264409ENST00000511653AGPAT9chr4

84465755

+COPS4chr4

83987591

+
5CDS-intronENST00000264409ENST00000511708AGPAT9chr4

84465755

+COPS4chr4

83987591

+
intron-3CDSENST00000509044ENST00000509093AGPAT9chr4

84465755

+COPS4chr4

83987591

+
intron-3CDSENST00000509044ENST00000264389AGPAT9chr4

84465755

+COPS4chr4

83987591

+
intron-3CDSENST00000509044ENST00000503682AGPAT9chr4

84465755

+COPS4chr4

83987591

+
intron-3CDSENST00000509044ENST00000511653AGPAT9chr4

84465755

+COPS4chr4

83987591

+
intron-intronENST00000509044ENST00000511708AGPAT9chr4

84465755

+COPS4chr4

83987591

+

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FusionProtFeatures for AGPAT9_COPS4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
AGPAT9

COPS4

Q9BT78

Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. Component of the COP9 signalosome complex (CSN), acomplex involved in various cellular and developmental processes.The CSN complex is an essential regulator of the ubiquitin (Ubl)conjugation pathway by mediating the deneddylation of the cullinsubunits of SCF-type E3 ligase complexes, leading to decrease theUbl ligase activity of SCF-type complexes such as SCF, CSA orDDB2. Also involved in the deneddylation of non-cullin subunitssuch as STON2. The complex is also involved in phosphorylation ofp53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1, IRF8/ICSBP andSNAPIN, possibly via its association with CK2 and PKD kinases.CSN-dependent phosphorylation of TP53 and JUN promotes andprotects degradation by the Ubl system, respectively.{ECO:0000269|PubMed:11285227, ECO:0000269|PubMed:11337588,ECO:0000269|PubMed:12628923, ECO:0000269|PubMed:12732143,ECO:0000269|PubMed:21102408, ECO:0000269|PubMed:9535219}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000264409+21214_3469435TransmembraneHelical
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000395226+31314_3469435TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000264409+212229_23469435MotifNote=HXXXXD motif
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000395226+313229_23469435MotifNote=HXXXXD motif
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000264409+212137_15769435TransmembraneHelical
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000264409+212161_18169435TransmembraneHelical
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000395226+313137_15769435TransmembraneHelical
HgeneAGPAT9chr4:84465755chr4:83987591ENST00000395226+313161_18169435TransmembraneHelical
TgeneCOPS4chr4:84465755chr4:83987591ENST00000264389+610197_366295407DomainPCI
TgeneCOPS4chr4:84465755chr4:83987591ENST00000509093+69197_366295353DomainPCI


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FusionGeneSequence for AGPAT9_COPS4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000509093_chr4_83987591_+_127aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000264389_chr4_83987591_+_181aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY
NNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000503682_chr4_83987591_+_181aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY
NNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000511653_chr4_83987591_+_195aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY
NNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETSGNHQSIFCLWIYLVWIVHINGIIQYVTCDLLADSTQHSIFRV

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000509093_chr4_83987591_+_127aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000264389_chr4_83987591_+_181aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY
NNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000503682_chr4_83987591_+_181aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY
NNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000511653_chr4_83987591_+_195aa
MEGAELAGKILSTWLTLVLGFILLPSVFGVSLGISEIYMKILVKTLEWATIRIEKGTPKESILKNSASVGSSILDRAVIEHNLLSASKLY
NNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETSGNHQSIFCLWIYLVWIVHINGIIQYVTCDLLADSTQHSIFRV


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000509093_chr4_83987591_+_381nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGCACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCC

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000264389_chr4_83987591_+_543nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGA
CGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCA
CTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAG

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000503682_chr4_83987591_+_543nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGA
CGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCA
CTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAG

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000511653_chr4_83987591_+_585nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGA
CGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACTTCTGGCAACCACCAATCCATCTTCTGTCTCTGGATTTAC
CTAGTCTGGATAGTTCATATAAATGGAATCATACAATATGTGACATGTGACCTTTTGGCTGATTCCACTCAGCATAGTATCTTTAGGGTT

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000509093_chr4_83987591_+_381nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGCACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCC

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000264389_chr4_83987591_+_543nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGA
CGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCA
CTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAG

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000503682_chr4_83987591_+_543nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGA
CGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCA
CTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAG

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000511653_chr4_83987591_+_585nt
ATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTG
TCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAG
TCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGA
CGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACTTCTGGCAACCACCAATCCATCTTCTGTCTCTGGATTTAC
CTAGTCTGGATAGTTCATATAAATGGAATCATACAATATGTGACATGTGACCTTTTGGCTGATTCCACTCAGCATAGTATCTTTAGGGTT


* Fusion transcript sequences (Full-length transcript).
>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000509093_chr4_83987591_+_1035nt
AGCTTCCAGCACAGCCCGCGGCCCGGTGCCAGCTCCGCCGGCGACCGGTGTGCCAAAGTGCGGTGCTCCCGCAGGGAACCTGGCTCGGGG
AGGGCCTCCAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCC
CTCCACTGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGG
TTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGT
GGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTG
TTATTGAACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTA
AGCACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGC
ACCAGAATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAGTGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTG
TGCAGATCAGTTTCACTATCTCCAAAGCATTTGCATCATGACCTTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACA
TTATTAGAGCAGGAAGTACAAGCATTTAAAATATGTAGTTCCCATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAA
AGCTTTTTCTTTAAACAGAGGTGAAATATCTGTGGCTAAAAAGTTTGAGATTTGTGATAACTTTGTAGTCATGTAAAACTTAAGTGCTTC

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000264389_chr4_83987591_+_1149nt
AGCTTCCAGCACAGCCCGCGGCCCGGTGCCAGCTCCGCCGGCGACCGGTGTGCCAAAGTGCGGTGCTCCCGCAGGGAACCTGGCTCGGGG
AGGGCCTCCAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCC
CTCCACTGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGG
TTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGT
GGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTG
TTATTGAACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTA
AGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGACGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACAC
GAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAG
AATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAGTGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTGTGCAG
ATCAGTTTCACTATCTCCAAAGCATTTGCATCATGACCTTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACATTATT
AGAGCAGGAAGTACAAGCATTTAAAATATGTAGTTCCCATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAAAGCTT
TTTCTTTAAACAGAGGTGAAATATCTGTGGCTAAAAAGTTTGAGATTTGTGATAACTTTGTAGTCATGTAAAACTTAAGTGCTTCATGCC

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000503682_chr4_83987591_+_1128nt
AGCTTCCAGCACAGCCCGCGGCCCGGTGCCAGCTCCGCCGGCGACCGGTGTGCCAAAGTGCGGTGCTCCCGCAGGGAACCTGGCTCGGGG
AGGGCCTCCAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCC
CTCCACTGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGG
TTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGT
GGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTG
TTATTGAACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTA
AGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGACGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACAC
GAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAG
AATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAGTGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTGTGCAG
ATCAGTTTCACTATCTCCAAAGCATTTGCATCATGACCTTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACATTATT
AGAGCAGGAAGTACAAGCATTTAAAATATGTAGTTCCCATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAAAGCTT
TTTCTTTAAACAGAGGTGAAATATCTGTGGCTAAAAAGTTTGAGATTTGTGATAACTTTGTAGTCATGTAAAACTTAAGTGCTTCATGCC

>In-frame_AGPAT9_ENST00000395226_chr4_84465755_+_COPS4_ENST00000511653_chr4_83987591_+_1235nt
AGCTTCCAGCACAGCCCGCGGCCCGGTGCCAGCTCCGCCGGCGACCGGTGTGCCAAAGTGCGGTGCTCCCGCAGGGAACCTGGCTCGGGG
AGGGCCTCCAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCC
CTCCACTGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGG
TTCTCGGCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGT
GGGCCACAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTG
TTATTGAACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTA
AGGCGGAAAAGATAGCATCTCAAATGATAACCGAAGGACGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACTT
CTGGCAACCACCAATCCATCTTCTGTCTCTGGATTTACCTAGTCTGGATAGTTCATATAAATGGAATCATACAATATGTGACATGTGACC
TTTTGGCTGATTCCACTCAGCATAGTATCTTTAGGGTTCATCCATGTCATGGCAGCACGAGAAGCCCTGCCAACGTGGGATAAGCAGATC
CAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGACAGCACAAGCCATGGAAGCCCAGATG
GCTCAGTGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTGTGCAGATCAGTTTCACTATCTCCAAAGCATTTGCATC
ATGACCTTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACATTATTAGAGCAGGAAGTACAAGCATTTAAAATATGTA
GTTCCCATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAAAGCTTTTTCTTTAAACAGAGGTGAAATATCTGTGGCT

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000509093_chr4_83987591_+_1029nt
GTTAACTGGCAGGGGCGAGGAGGAGCCCAGGGAGGAAGGAAGGATATTGCCGTAATTCTGAAAGTTTTTTTCCTTCCTCTCTTCCCTTCG
CAGAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCCCTCCAC
TGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCG
GCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCA
CAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTG
AACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGCACG
AGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGA
ATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAGTGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTGTGCAGA
TCAGTTTCACTATCTCCAAAGCATTTGCATCATGACCTTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACATTATTA
GAGCAGGAAGTACAAGCATTTAAAATATGTAGTTCCCATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAAAGCTTT
TTCTTTAAACAGAGGTGAAATATCTGTGGCTAAAAAGTTTGAGATTTGTGATAACTTTGTAGTCATGTAAAACTTAAGTGCTTCATGCCT

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000264389_chr4_83987591_+_1143nt
GTTAACTGGCAGGGGCGAGGAGGAGCCCAGGGAGGAAGGAAGGATATTGCCGTAATTCTGAAAGTTTTTTTCCTTCCTCTCTTCCCTTCG
CAGAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCCCTCCAC
TGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCG
GCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCA
CAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTG
AACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGG
AAAAGATAGCATCTCAAATGATAACCGAAGGACGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAG
CCCTGCCAACGTGGGATAAGCAGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGA
CAGCACAAGCCATGGAAGCCCAGATGGCTCAGTGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTGTGCAGATCAGT
TTCACTATCTCCAAAGCATTTGCATCATGACCTTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACATTATTAGAGCA
GGAAGTACAAGCATTTAAAATATGTAGTTCCCATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAAAGCTTTTTCTT
TAAACAGAGGTGAAATATCTGTGGCTAAAAAGTTTGAGATTTGTGATAACTTTGTAGTCATGTAAAACTTAAGTGCTTCATGCCTCTCCA

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000503682_chr4_83987591_+_1122nt
GTTAACTGGCAGGGGCGAGGAGGAGCCCAGGGAGGAAGGAAGGATATTGCCGTAATTCTGAAAGTTTTTTTCCTTCCTCTCTTCCCTTCG
CAGAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCCCTCCAC
TGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCG
GCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCA
CAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTG
AACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGG
AAAAGATAGCATCTCAAATGATAACCGAAGGACGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAG
CCCTGCCAACGTGGGATAAGCAGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGA
CAGCACAAGCCATGGAAGCCCAGATGGCTCAGTGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTGTGCAGATCAGT
TTCACTATCTCCAAAGCATTTGCATCATGACCTTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACATTATTAGAGCA
GGAAGTACAAGCATTTAAAATATGTAGTTCCCATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAAAGCTTTTTCTT
TAAACAGAGGTGAAATATCTGTGGCTAAAAAGTTTGAGATTTGTGATAACTTTGTAGTCATGTAAAACTTAAGTGCTTCATGCCTCTCCA

>In-frame_AGPAT9_ENST00000264409_chr4_84465755_+_COPS4_ENST00000511653_chr4_83987591_+_1229nt
GTTAACTGGCAGGGGCGAGGAGGAGCCCAGGGAGGAAGGAAGGATATTGCCGTAATTCTGAAAGTTTTTTTCCTTCCTCTCTTCCCTTCG
CAGAGGTGAGTGCCGGGCTCGGCGCTCTGCTCCTGGAGCTCCCGCGGGACTGCCTGGGGACAGGGACTGCTGTGGCGCTCGGCCCTCCAC
TGCGGACCTCTCCTGAGTGGGTGCGCCGAGTCATGGAGGGCGCAGAGCTGGCCGGGAAGATCCTTTCCACCTGGCTGACGCTGGTTCTCG
GCTTCATCCTTTTACCTTCGGTCTTCGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGTGGGCCA
CAATACGAATTGAAAAAGGAACCCCAAAGGAGTCGATTCTTAAAAACTCTGCTTCTGTTGGTTCCAGCATCTTGGACAGAGCTGTTATTG
AACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCGG
AAAAGATAGCATCTCAAATGATAACCGAAGGACGTATGAATGGATTTATTGACCAGATTGATGGAATAGTTCATTTTGAAACTTCTGGCA
ACCACCAATCCATCTTCTGTCTCTGGATTTACCTAGTCTGGATAGTTCATATAAATGGAATCATACAATATGTGACATGTGACCTTTTGG
CTGATTCCACTCAGCATAGTATCTTTAGGGTTCATCCATGTCATGGCAGCACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCA
CTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAAACAGCACCAGAATGGACAGCACAAGCCATGGAAGCCCAGATGGCTCAG
TGAATCCTTGCAGAACTTCTGTGCACATGACATCTTTTTCCATGTTGTGCAGATCAGTTTCACTATCTCCAAAGCATTTGCATCATGACC
TTATACATTTCAATCCCTTTTATGCTGGATTCCGTTTAAAGAAGACATTATTAGAGCAGGAAGTACAAGCATTTAAAATATGTAGTTCCC
ATATATTTCAGGGTCTCTGTGTATTAAGCTAACTCAGATGTTTTGAAAGCTTTTTCTTTAAACAGAGGTGAAATATCTGTGGCTAAAAAG


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FusionGenePPI for AGPAT9_COPS4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
AGPAT9ELAVL1, HLA-DPA1, TSPAN17, SLC39A4, TCTN2, TCTN3, TMEM17, TMEM216, SLC6A15, TRIM25COPS4RCBTB2, CCDC85B, USHBP1, C19orf57, MBIP, WRAP73, COPS8, COPS5, COPS6, BTRC, KLHL13, DDB1, CUL4A, COPS3, CUL1, UBC, IKBKB, IRF8, GPS1, COPS2, NEDD8, COPS7A, DDB2, ERCC8, VPRBP, CUL3, CUL4B, CUL5, CUL2, DCUN1D1, PTPN14, TOR1A, SNAPIN, STON2, ERCC6, GRK5, LRR1, DDA1, RFWD2, COPS7B, RBX1, SKP1, FBXO17, TCEB2, TCEB1, FEM1B, LRRC14, BTBD1, BTBD2, KLHL42, KLHL18, DCAF11, DTL, CRBN, TOR1AIP2, IRF5, FBXW4, BAG3, FOS, YWHAQ, FBXO6, CAST, DCAF8, ENAH, EPB41L1, EPB41L2, HSP90AB1, KPNA2, PRMT5, WDR77, STIP1, MOV10, NXF1, STK11, GUCY1A3, TP53, CSNK2A1, EIF3M, NTRK1, KRAS, IBTK, FGFR1OP, HEMGN, APBB3, DET1, UBE2M, FBXO7, KLHL10, DCAF4, DENR, DLD, DCAF4L2, SIRT7


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for AGPAT9_COPS4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for AGPAT9_COPS4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource