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Fusion gene ID: 11410 |
FusionGeneSummary for ELK3_DDIT4L |
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Fusion gene information | Fusion gene name: ELK3_DDIT4L | Fusion gene ID: 11410 | Hgene | Tgene | Gene symbol | ELK3 | DDIT4L | Gene ID | 2004 | 115265 |
Gene name | ELK3, ETS transcription factor | DNA damage inducible transcript 4 like | |
Synonyms | ERP|NET|SAP-2|SAP2 | REDD2|Rtp801L | |
Cytomap | 12q23.1 | 4q24 | |
Type of gene | protein-coding | protein-coding | |
Description | ETS domain-containing protein Elk-3ELK3, ETS-domain protein (SRF accessory protein 2)ETS-related protein ERPETS-related protein NETSRF accessory protein 2serum response factor accessory protein 2 | DNA damage-inducible transcript 4-like proteinHIF-1 responsive protein RTP801-likeREDD-2homolog of mouse SMHS1protein regulated in development and DNA damage response 2regulated in development and DNA damage response 2 | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | P41970 | Q96D03 | |
Ensembl transtripts involved in fusion gene | ENST00000228741, ENST00000552142, ENST00000549529, | ENST00000273990, | |
Fusion gene scores | * DoF score | 10 X 3 X 4=120 | 1 X 1 X 1=1 |
# samples | 9 | 1 | |
** MAII score | log2(9/120*10)=-0.415037499278844 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: ELK3 [Title/Abstract] AND DDIT4L [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ELK3 | GO:0045892 | negative regulation of transcription, DNA-templated | 12933792 |
Hgene | ELK3 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 12788937 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LIHC | TCGA-ED-A82E-01A | ELK3 | chr12 | 96617551 | + | DDIT4L | chr4 | 101111189 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000228741 | ENST00000273990 | ELK3 | chr12 | 96617551 | + | DDIT4L | chr4 | 101111189 | - |
5CDS-5UTR | ENST00000552142 | ENST00000273990 | ELK3 | chr12 | 96617551 | + | DDIT4L | chr4 | 101111189 | - |
intron-5UTR | ENST00000549529 | ENST00000273990 | ELK3 | chr12 | 96617551 | + | DDIT4L | chr4 | 101111189 | - |
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FusionProtFeatures for ELK3_DDIT4L |
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Hgene | Tgene |
ELK3 | DDIT4L |
May be a negative regulator of transcription, but canactivate transcription when coexpressed with Ras, Src or Mos.Forms a ternary complex with the serum response factor and the ETSand SRF motifs of the Fos serum response element. | Inhibits cell growth by regulating the TOR signalingpathway upstream of the TSC1-TSC2 complex and downstream of AKT1.{ECO:0000269|PubMed:15545625, ECO:0000269|PubMed:15632201}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ELK3_DDIT4L |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ELK3_DDIT4L |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ELK3 | TCF3, TOP1, APP | DDIT4L | SNRPG, PRKAB2, MORF4L2, CALCOCO2, LSM7, TENC1, LRRC15 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ELK3_DDIT4L |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ELK3_DDIT4L |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ELK3 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Tgene | DDIT4L | C0025202 | melanoma | 1 | CTD_human |