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Fusion gene ID: 11354 |
FusionGeneSummary for EIF4G3_LAPTM4A |
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Fusion gene information | Fusion gene name: EIF4G3_LAPTM4A | Fusion gene ID: 11354 | Hgene | Tgene | Gene symbol | EIF4G3 | LAPTM4A | Gene ID | 8672 | 9741 |
Gene name | eukaryotic translation initiation factor 4 gamma 3 | lysosomal protein transmembrane 4 alpha | |
Synonyms | eIF-4G 3|eIF4G 3|eIF4GII | HUMORF13|LAPTM4|MBNT|Mtrp | |
Cytomap | 1p36.12 | 2p24.1 | |
Type of gene | protein-coding | protein-coding | |
Description | eukaryotic translation initiation factor 4 gamma 3eIF-4-gamma 3eIF-4-gamma II | lysosomal-associated transmembrane protein 4Agolgi 4-transmembrane-spanning transporter MTPlysosomal-associated protein transmembrane 4 alphamembrane nucleoside transporter | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O43432 | Q15012 | |
Ensembl transtripts involved in fusion gene | ENST00000264211, ENST00000400422, ENST00000602326, ENST00000374935, ENST00000374937, ENST00000536266, ENST00000374933, ENST00000544689, ENST00000356916, ENST00000374927, ENST00000537738, | ENST00000175091, | |
Fusion gene scores | * DoF score | 13 X 10 X 10=1300 | 3 X 3 X 1=9 |
# samples | 18 | 3 | |
** MAII score | log2(18/1300*10)=-2.85244281158614 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: EIF4G3 [Title/Abstract] AND LAPTM4A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BP326154 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-5UTR | ENST00000264211 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000400422 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000602326 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000374935 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000374937 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000536266 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000374933 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000544689 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000356916 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000374927 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
intron-5UTR | ENST00000537738 | ENST00000175091 | EIF4G3 | chr1 | 21268407 | - | LAPTM4A | chr2 | 20251361 | - |
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FusionProtFeatures for EIF4G3_LAPTM4A |
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Hgene | Tgene |
EIF4G3 | LAPTM4A |
Probable component of the protein complex eIF4F, whichis involved in the recognition of the mRNA cap, ATP-dependentunwinding of 5'-terminal secondary structure and recruitment ofmRNA to the ribosome. Thought to be a functional homolog ofEIF4G1. {ECO:0000269|PubMed:9418880}. | May function in the transport of nucleosides and/ornucleoside derivatives between the cytosol and the lumen of anintracellular membrane-bound compartment. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for EIF4G3_LAPTM4A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for EIF4G3_LAPTM4A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for EIF4G3_LAPTM4A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for EIF4G3_LAPTM4A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |