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Fusion gene ID: 11244 |
FusionGeneSummary for EIF3A_TBC1D1 |
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Fusion gene information | Fusion gene name: EIF3A_TBC1D1 | Fusion gene ID: 11244 | Hgene | Tgene | Gene symbol | EIF3A | TBC1D1 | Gene ID | 8661 | 23216 |
Gene name | eukaryotic translation initiation factor 3 subunit A | TBC1 domain family member 1 | |
Synonyms | EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 | TBC|TBC1 | |
Cytomap | 10q26.11 | 4p14 | |
Type of gene | protein-coding | protein-coding | |
Description | eukaryotic translation initiation factor 3 subunit AEIF3, p180 subunitcentrosomin homologcytoplasmic protein p167eIF-3-thetaeIF3 p167eIF3 p180eIF3 p185eukaryotic translation initiation factor 3 subunit 10eukaryotic translation initiation factor 3 | TBC1 domain family member 1TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q14152 | Q86TI0 | |
Ensembl transtripts involved in fusion gene | ENST00000369144, ENST00000541549, | ENST00000508802, ENST00000261439, ENST00000402522, ENST00000407365, | |
Fusion gene scores | * DoF score | 6 X 6 X 2=72 | 8 X 7 X 4=224 |
# samples | 6 | 9 | |
** MAII score | log2(6/72*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/224*10)=-1.31550182572793 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: EIF3A [Title/Abstract] AND TBC1D1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | EIF3A | GO:0001732 | formation of cytoplasmic translation initiation complex | 17581632 |
Hgene | EIF3A | GO:0075522 | IRES-dependent viral translational initiation | 9573242|23766293|24357634 |
Hgene | EIF3A | GO:0075525 | viral translational termination-reinitiation | 21347434 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | HNSC | TCGA-P3-A6T8-01A | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000369144 | ENST00000508802 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
Frame-shift | ENST00000369144 | ENST00000261439 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
5CDS-intron | ENST00000369144 | ENST00000402522 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
5CDS-intron | ENST00000369144 | ENST00000407365 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
Frame-shift | ENST00000541549 | ENST00000508802 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
Frame-shift | ENST00000541549 | ENST00000261439 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
5CDS-intron | ENST00000541549 | ENST00000402522 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
5CDS-intron | ENST00000541549 | ENST00000407365 | EIF3A | chr10 | 120809313 | - | TBC1D1 | chr4 | 38091553 | + |
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FusionProtFeatures for EIF3A_TBC1D1 |
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Hgene | Tgene |
EIF3A | TBC1D1 |
RNA-binding component of the eukaryotic translationinitiation factor 3 (eIF-3) complex, which is required for severalsteps in the initiation of protein synthesis (PubMed:17581632,PubMed:25849773). The eIF-3 complex associates with the 40Sribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiationcomplex (43S PIC). The eIF-3 complex stimulates mRNA recruitmentto the 43S PIC and scanning of the mRNA for AUG recognition. TheeIF-3 complex is also required for disassembly and recycling ofpost-termination ribosomal complexes and subsequently preventspremature joining of the 40S and 60S ribosomal subunits prior toinitiation (PubMed:17581632, PubMed:11169732). The eIF-3 complexspecifically targets and initiates translation of a subset ofmRNAs involved in cell proliferation, including cell cycling,differentiation and apoptosis, and uses different modes of RNAstem-loop binding to exert either translational activation orrepression (PubMed:25849773, PubMed:27462815). {ECO:0000255|HAMAP-Rule:MF_03000, ECO:0000269|PubMed:11169732,ECO:0000269|PubMed:17581632, ECO:0000269|PubMed:25849773,ECO:0000269|PubMed:27462815}. (Microbial infection) Essential for the initiation oftranslation on type-1 viral ribosomal entry sites (IRESs), likefor HCV, PV, EV71 or BEV translation (PubMed:23766293,PubMed:24357634). {ECO:0000269|PubMed:23766293,ECO:0000269|PubMed:24357634}. (Microbial infection) In case of FCV infection, plays arole in the ribosomal termination-reinitiation event leading tothe translation of VP2 (PubMed:18056426).{ECO:0000269|PubMed:18056426}. | May act as a GTPase-activating protein for Rab familyprotein(s). May play a role in the cell cycle and differentiationof various tissues. Involved in the trafficking and translocationof GLUT4-containing vesicles and insulin-stimulated glucose uptakeinto cells (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for EIF3A_TBC1D1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for EIF3A_TBC1D1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
EIF3A | EIF1B, EIF4A2, EIF3L, EIF3E, EIF3H, EIF3I, EIF3F, EIF4A1, EIF3K, EIF3M, EIF3D, MCC, TFE3, EIF3B, EIF3G, EIF3J, EIF3C, EIF4G1, EIF4G2, EIF4B, USP3, WDR48, PIK3C2A, PRKAG2, UBA5, YWHAZ, RNF139, CACNA1A, RAD21, CDK2, GRK5, EIF4H, RPLP1, NCL, NAP1L4, HNRNPF, MSMO1, MYH9, MRPL46, MYH11, TOMM40, TUBB6, SMURF1, DDX3X, FN1, VCAM1, UPF1, ITGA4, BBS1, BBS4, CD81, IGSF8, ICAM1, FBXO6, TARDBP, DYNC1I2, EIF3CL, RPS10, RPS12, RPS18, RPS20, RPS23, RPS26, RPS3, RPS3A, LARP1, NUDT21, RPS25, RPS9, YTHDF2, SHFM1, WWOX, LGR4, RIOK2, STAU1, WWP2, REL, TFIP11, OBSL1, CCDC8, EED, RNF2, BZW2, RSPH9, PAIP1, UNK, ABCF2, ATP6V0D1, NTRK1, KRAS, HERC2, SRPK2, AHSA1, KIF11, NPM1, RPL10, XRCC3, GAN, MEX3C, RNF126, U2AF2, FAU, ZNF746, GPBP1L1, CPNE2, GPBP1, UBC, MTNR1B, CYLD, DLD, DNM1L, PDHA1, SOD1, G3BP1, BRCA1 | TBC1D1 | YWHAG, MAP1LC3A, GABARAPL1, BARD1, ROR1, YWHAE, SMAD2, YWHAB, HSPB1, ZFC3H1, KCTD3, KIF13B, ZBTB21, KSR1, CGN, GIGYF1, CBY1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for EIF3A_TBC1D1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for EIF3A_TBC1D1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | EIF3A | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Tgene | TBC1D1 | C0028754 | Obesity | 3 | CTD_human |