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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 11244

FusionGeneSummary for EIF3A_TBC1D1

check button Fusion gene summary
Fusion gene informationFusion gene name: EIF3A_TBC1D1
Fusion gene ID: 11244
HgeneTgene
Gene symbol

EIF3A

TBC1D1

Gene ID

8661

23216

Gene nameeukaryotic translation initiation factor 3 subunit ATBC1 domain family member 1
SynonymsEIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185TBC|TBC1
Cytomap

10q26.11

4p14

Type of geneprotein-codingprotein-coding
Descriptioneukaryotic translation initiation factor 3 subunit AEIF3, p180 subunitcentrosomin homologcytoplasmic protein p167eIF-3-thetaeIF3 p167eIF3 p180eIF3 p185eukaryotic translation initiation factor 3 subunit 10eukaryotic translation initiation factor 3TBC1 domain family member 1TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
Modification date2018052320180523
UniProtAcc

Q14152

Q86TI0

Ensembl transtripts involved in fusion geneENST00000369144, ENST00000541549, 
ENST00000508802, ENST00000261439, 
ENST00000402522, ENST00000407365, 
Fusion gene scores* DoF score6 X 6 X 2=728 X 7 X 4=224
# samples 69
** MAII scorelog2(6/72*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/224*10)=-1.31550182572793
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: EIF3A [Title/Abstract] AND TBC1D1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneEIF3A

GO:0001732

formation of cytoplasmic translation initiation complex

17581632

HgeneEIF3A

GO:0075522

IRES-dependent viral translational initiation

9573242|23766293|24357634

HgeneEIF3A

GO:0075525

viral translational termination-reinitiation

21347434


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVHNSCTCGA-P3-A6T8-01AEIF3Achr10

120809313

-TBC1D1chr4

38091553

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000369144ENST00000508802EIF3Achr10

120809313

-TBC1D1chr4

38091553

+
Frame-shiftENST00000369144ENST00000261439EIF3Achr10

120809313

-TBC1D1chr4

38091553

+
5CDS-intronENST00000369144ENST00000402522EIF3Achr10

120809313

-TBC1D1chr4

38091553

+
5CDS-intronENST00000369144ENST00000407365EIF3Achr10

120809313

-TBC1D1chr4

38091553

+
Frame-shiftENST00000541549ENST00000508802EIF3Achr10

120809313

-TBC1D1chr4

38091553

+
Frame-shiftENST00000541549ENST00000261439EIF3Achr10

120809313

-TBC1D1chr4

38091553

+
5CDS-intronENST00000541549ENST00000402522EIF3Achr10

120809313

-TBC1D1chr4

38091553

+
5CDS-intronENST00000541549ENST00000407365EIF3Achr10

120809313

-TBC1D1chr4

38091553

+

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FusionProtFeatures for EIF3A_TBC1D1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
EIF3A

Q14152

TBC1D1

Q86TI0

RNA-binding component of the eukaryotic translationinitiation factor 3 (eIF-3) complex, which is required for severalsteps in the initiation of protein synthesis (PubMed:17581632,PubMed:25849773). The eIF-3 complex associates with the 40Sribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiationcomplex (43S PIC). The eIF-3 complex stimulates mRNA recruitmentto the 43S PIC and scanning of the mRNA for AUG recognition. TheeIF-3 complex is also required for disassembly and recycling ofpost-termination ribosomal complexes and subsequently preventspremature joining of the 40S and 60S ribosomal subunits prior toinitiation (PubMed:17581632, PubMed:11169732). The eIF-3 complexspecifically targets and initiates translation of a subset ofmRNAs involved in cell proliferation, including cell cycling,differentiation and apoptosis, and uses different modes of RNAstem-loop binding to exert either translational activation orrepression (PubMed:25849773, PubMed:27462815). {ECO:0000255|HAMAP-Rule:MF_03000, ECO:0000269|PubMed:11169732,ECO:0000269|PubMed:17581632, ECO:0000269|PubMed:25849773,ECO:0000269|PubMed:27462815}. (Microbial infection) Essential for the initiation oftranslation on type-1 viral ribosomal entry sites (IRESs), likefor HCV, PV, EV71 or BEV translation (PubMed:23766293,PubMed:24357634). {ECO:0000269|PubMed:23766293,ECO:0000269|PubMed:24357634}. (Microbial infection) In case of FCV infection, plays arole in the ribosomal termination-reinitiation event leading tothe translation of VP2 (PubMed:18056426).{ECO:0000269|PubMed:18056426}. May act as a GTPase-activating protein for Rab familyprotein(s). May play a role in the cell cycle and differentiationof various tissues. Involved in the trafficking and translocationof GLUT4-containing vesicles and insulin-stimulated glucose uptakeinto cells (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for EIF3A_TBC1D1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for EIF3A_TBC1D1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
EIF3AEIF1B, EIF4A2, EIF3L, EIF3E, EIF3H, EIF3I, EIF3F, EIF4A1, EIF3K, EIF3M, EIF3D, MCC, TFE3, EIF3B, EIF3G, EIF3J, EIF3C, EIF4G1, EIF4G2, EIF4B, USP3, WDR48, PIK3C2A, PRKAG2, UBA5, YWHAZ, RNF139, CACNA1A, RAD21, CDK2, GRK5, EIF4H, RPLP1, NCL, NAP1L4, HNRNPF, MSMO1, MYH9, MRPL46, MYH11, TOMM40, TUBB6, SMURF1, DDX3X, FN1, VCAM1, UPF1, ITGA4, BBS1, BBS4, CD81, IGSF8, ICAM1, FBXO6, TARDBP, DYNC1I2, EIF3CL, RPS10, RPS12, RPS18, RPS20, RPS23, RPS26, RPS3, RPS3A, LARP1, NUDT21, RPS25, RPS9, YTHDF2, SHFM1, WWOX, LGR4, RIOK2, STAU1, WWP2, REL, TFIP11, OBSL1, CCDC8, EED, RNF2, BZW2, RSPH9, PAIP1, UNK, ABCF2, ATP6V0D1, NTRK1, KRAS, HERC2, SRPK2, AHSA1, KIF11, NPM1, RPL10, XRCC3, GAN, MEX3C, RNF126, U2AF2, FAU, ZNF746, GPBP1L1, CPNE2, GPBP1, UBC, MTNR1B, CYLD, DLD, DNM1L, PDHA1, SOD1, G3BP1, BRCA1TBC1D1YWHAG, MAP1LC3A, GABARAPL1, BARD1, ROR1, YWHAE, SMAD2, YWHAB, HSPB1, ZFC3H1, KCTD3, KIF13B, ZBTB21, KSR1, CGN, GIGYF1, CBY1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for EIF3A_TBC1D1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for EIF3A_TBC1D1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneEIF3AC0033578Prostatic Neoplasms1CTD_human
TgeneTBC1D1C0028754Obesity3CTD_human