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Fusion gene ID: 11203 |
FusionGeneSummary for EIF2AK3_NBAS |
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Fusion gene information | Fusion gene name: EIF2AK3_NBAS | Fusion gene ID: 11203 | Hgene | Tgene | Gene symbol | EIF2AK3 | NBAS | Gene ID | 9451 | 51594 |
Gene name | eukaryotic translation initiation factor 2 alpha kinase 3 | neuroblastoma amplified sequence | |
Synonyms | PEK|PERK|WRS | ILFS2|NAG|SOPH | |
Cytomap | 2p11.2 | 2p24.3 | |
Type of gene | protein-coding | protein-coding | |
Description | eukaryotic translation initiation factor 2-alpha kinase 3PRKR-like endoplasmic reticulum kinasepancreatic EIF2-alpha kinase | neuroblastoma-amplified sequenceNAG/BC035112 fusionNAG/FAM49A fusionneuroblastoma-amplified gene protein | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9NZJ5 | A2RRP1 | |
Ensembl transtripts involved in fusion gene | ENST00000419748, ENST00000303236, ENST00000470706, | ENST00000441750, ENST00000281513, | |
Fusion gene scores | * DoF score | 3 X 4 X 2=24 | 8 X 9 X 3=216 |
# samples | 4 | 9 | |
** MAII score | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(9/216*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: EIF2AK3 [Title/Abstract] AND NBAS [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | EIF2AK3 | GO:0006983 | ER overload response | 10677345|11907036 |
Hgene | EIF2AK3 | GO:0030968 | endoplasmic reticulum unfolded protein response | 10677345|11907036|22169477 |
Hgene | EIF2AK3 | GO:0046777 | protein autophosphorylation | 10026192|11907036 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-DA-A95Y-06A | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15564592 | - |
TCGA | LD | SKCM | TCGA-DA-A95Y-06A | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15567918 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000419748 | ENST00000441750 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15564592 | - |
intron-3CDS | ENST00000419748 | ENST00000281513 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15564592 | - |
Frame-shift | ENST00000303236 | ENST00000441750 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15564592 | - |
Frame-shift | ENST00000303236 | ENST00000281513 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15564592 | - |
intron-3CDS | ENST00000470706 | ENST00000441750 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15564592 | - |
intron-3CDS | ENST00000470706 | ENST00000281513 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15564592 | - |
intron-3CDS | ENST00000419748 | ENST00000441750 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15567918 | - |
intron-3CDS | ENST00000419748 | ENST00000281513 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15567918 | - |
Frame-shift | ENST00000303236 | ENST00000441750 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15567918 | - |
Frame-shift | ENST00000303236 | ENST00000281513 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15567918 | - |
intron-3CDS | ENST00000470706 | ENST00000441750 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15567918 | - |
intron-3CDS | ENST00000470706 | ENST00000281513 | EIF2AK3 | chr2 | 88926485 | - | NBAS | chr2 | 15567918 | - |
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FusionProtFeatures for EIF2AK3_NBAS |
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Hgene | Tgene |
EIF2AK3 | NBAS |
Metabolic-stress sensing protein kinase thatphosphorylates the alpha subunit of eukaryotic translationinitiation factor 2 (eIF-2-alpha/EIF2S1) on 'Ser-52' during theunfolded protein response (UPR) and in response to low amino acidavailability. Converts phosphorylated eIF-2-alpha/EIF2S1 either ina global protein synthesis inhibitor, leading to a reduced overallutilization of amino acids, or to a translation initiationactivator of specific mRNAs, such as the transcriptional activatorATF4, and hence allowing ATF4-mediated reprogramming of amino acidbiosynthetic gene expression to alleviate nutrient depletion.Serves as a critical effector of unfolded protein response (UPR)-induced G1 growth arrest due to the loss of cyclin-D1 (CCND1).Involved in control of mitochondrial morphology and function.{ECO:0000250|UniProtKB:Q9Z2B5}. | Involved in Golgi-to-endoplasmic reticulum (ER)retrograde transport; the function is proposed to depend on itsassociation in the NRZ complex which is believed to play a role inSNARE assembly at the ER (PubMed:19369418).{ECO:0000269|PubMed:19369418, ECO:0000305}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for EIF2AK3_NBAS |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for EIF2AK3_NBAS |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
EIF2AK3 | NFE2L2, DNAJC3, HSP90AA1, HSPA5, HSP90B1, BCL6, RHBDL3, EIF2S1, COPS5, SUZ12, HLA-DRA, HLA-C, OGFOD3, GLT8D2, HLA-E, CHRNA9, TCTN3, TMEM216, FOXK1, FOXK2, TRAF1, RPN2, DLK2, B4GAT1, SCN3B, P2RX2, CHRND, ASIC4, PCDHGB4, TMPRSS3, PCDHA4, HLA-DRB1, PCDHA12, TGIF2LY, NCEH1, PCDH20, VAPA, SFTPC, PCDHB11, ASIC1, ARSG, GRIA3, ILF3, ILF2 | NBAS | VTI1B, STX6, USE1, STX12, NAPG, STX18, HSPB1, NTRK1, AK1, DVL2, RINT1, SCFD2, SEC22B, VAMP4, TEX28 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for EIF2AK3_NBAS |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for EIF2AK3_NBAS |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | EIF2AK3 | C0038220 | Status Epilepticus | 1 | CTD_human |
Hgene | EIF2AK3 | C0038868 | Progressive supranuclear palsy | 1 | CTD_human |
Hgene | EIF2AK3 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Hgene | EIF2AK3 | C0432217 | Wolcott-Rallison syndrome | 1 | CTD_human;ORPHANET;UNIPROT |
Tgene | NBAS | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Tgene | NBAS | C3541319 | SHORT STATURE, OPTIC NERVE ATROPHY, AND PELGER-HUET ANOMALY | 1 | ORPHANET;UNIPROT |
Tgene | NBAS | C3809651 | INFANTILE LIVER FAILURE SYNDROME 2 | 1 | ORPHANET;UNIPROT |