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Fusion gene ID: 11155 |
FusionGeneSummary for EHD4_FSIP1 |
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Fusion gene information | Fusion gene name: EHD4_FSIP1 | Fusion gene ID: 11155 | Hgene | Tgene | Gene symbol | EHD4 | FSIP1 | Gene ID | 30844 | 161835 |
Gene name | EH domain containing 4 | fibrous sheath interacting protein 1 | |
Synonyms | PAST4 | HSD10 | |
Cytomap | 15q15.1 | 15q14 | |
Type of gene | protein-coding | protein-coding | |
Description | EH domain-containing protein 4PAST homolog 4hepatocellular carcinoma-associated protein 10/11hepatocellular carcinoma-associated protein HCA11ortholog of rat pincher | fibrous sheath-interacting protein 1 | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | Q9H223 | Q8NA03 | |
Ensembl transtripts involved in fusion gene | ENST00000220325, | ENST00000350221, ENST00000559692, | |
Fusion gene scores | * DoF score | 4 X 4 X 4=64 | 2 X 2 X 2=8 |
# samples | 5 | 2 | |
** MAII score | log2(5/64*10)=-0.356143810225275 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: EHD4 [Title/Abstract] AND FSIP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-A1-A0SB-01A | EHD4 | chr15 | 42211408 | - | FSIP1 | chr15 | 39910446 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000220325 | ENST00000350221 | EHD4 | chr15 | 42211408 | - | FSIP1 | chr15 | 39910446 | - |
5CDS-intron | ENST00000220325 | ENST00000559692 | EHD4 | chr15 | 42211408 | - | FSIP1 | chr15 | 39910446 | - |
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FusionProtFeatures for EHD4_FSIP1 |
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Hgene | Tgene |
EHD4 | FSIP1 |
ATP- and membrane-binding protein that probably controlsmembrane reorganization/tubulation upon ATP hydrolysis. Plays arole in early endosomal transport. {ECO:0000269|PubMed:17233914,ECO:0000269|PubMed:18331452}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 58_289 | 308 | 542 | Domain | Dynamin-type G |
Hgene | EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 156_159 | 308 | 542 | Region | G3 motif |
Hgene | EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 222_225 | 308 | 542 | Region | G4 motif |
Hgene | EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 246_246 | 308 | 542 | Region | G5 motif |
Hgene | EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 68_75 | 308 | 542 | Region | G1 motif |
Hgene | EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 94_95 | 308 | 542 | Region | G2 motif |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 492_503 | 308 | 542 | Calcium binding | Ontology_term=ECO:0000250,ECO:0000255 |
Hgene | >EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 447_535 | 308 | 542 | Domain | EH |
Hgene | >EHD4 | chr15:42211408 | chr15:39910446 | ENST00000220325 | - | 4 | 6 | 479_514 | 308 | 542 | Domain | EF-hand |
Tgene | FSIP1 | chr15:42211408 | chr15:39910446 | ENST00000350221 | - | 9 | 12 | 105_153 | 396 | 582 | Coiled coil | Ontology_term=ECO:0000255 |
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FusionGeneSequence for EHD4_FSIP1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_EHD4_ENST00000220325_chr15_42211408_-_FSIP1_ENST00000350221_chr15_39910446_-_494aa MFSWMGRQAGGRERAGGADAVQTVTGGLRSLYLRKVLPLEEAYRFHEFHSPALEDADFENKPMILLVGQYSTGKTTFIRYLLEQDFPGMR IGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISVIDSPGILSGEKQRISRGYDFCQVLQW FAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDN RRLFEAEAQDLFRDIQSLPQKAAVRKLNDLIKRARLAKLESTSCLSEEQLKCLLDECILKQKSIIKLSSERKKEDIEDVTPVFPQLSRSI ISKLLNESETKVQKTEVEDADMLESEECEASKGYYLTKALTGHNMSEALVTEAENMKCLQFSKDVIISDTKDYFMSKTLGIGRLKRPSFL |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_EHD4_ENST00000220325_chr15_42211408_-_FSIP1_ENST00000350221_chr15_39910446_-_1482nt ATGTTCAGCTGGATGGGGCGGCAGGCGGGCGGGCGCGAACGCGCTGGCGGCGCGGACGCGGTGCAGACGGTGACGGGCGGGCTGCGCTCG CTCTACCTGCGCAAGGTGCTGCCGCTGGAGGAGGCGTACCGCTTCCACGAGTTCCACTCGCCTGCGCTGGAGGACGCCGACTTCGAGAAC AAGCCCATGATCCTGCTGGTGGGCCAGTACAGCACCGGCAAGACCACCTTCATCAGATACCTACTGGAGCAGGATTTCCCAGGCATGAGG ATTGGTCCGGAGCCCACCACAGACTCCTTCATCGCCGTGATGTATGGAGAGACTGAGGGCAGCACCCCAGGGAATGCTTTAGTCGTGGAC CCCAAAAAGCCGTTTAGAAAGCTCAGTCGCTTTGGAAACGCTTTCCTGAATCGATTCATGTGCTCACAGCTCCCCAATCAGGTCCTGAAG AGCATCAGCGTCATCGACAGCCCCGGCATCCTTTCTGGGGAGAAGCAGCGCATCAGCCGAGGCTATGACTTCTGCCAGGTCCTGCAGTGG TTTGCCGAGAGGGTGGACAGGATCATCCTGCTCTTTGACGCTCACAAGCTGGACATCTCAGATGAATTCTCAGAGGCCATCAAGGCCTTC CGGGGCCAGGACGACAAGATCCGTGTCGTGCTGAACAAGGCCGACCAAGTGGACACGCAGCAGCTGATGCGGGTCTACGGGGCCCTCATG TGGTCCCTAGGCAAGGTCATCAACACGCCCGAGGTACTGCGCGTCTACATTGGCTCCTTCTGGGCGCAGCCCCTGCAGAACACGGACAAC CGCCGGCTCTTCGAGGCTGAGGCCCAGGACCTCTTTAGAGACATCCAGAGCCTCCCCCAGAAGGCAGCGGTGCGCAAGCTCAACGACCTC ATCAAGCGAGCGAGGCTGGCCAAGTTAGAGTCCACATCATGTCTCTCTGAAGAACAGTTAAAGTGTCTTCTGGATGAATGCATACTTAAA CAAAAATCCATCATTAAACTTTCTTCAGAAAGAAAAAAGGAAGACATTGAGGACGTAACACCTGTGTTCCCCCAGCTTTCCAGGTCCATC ATCTCTAAATTGCTAAATGAATCAGAAACAAAGGTCCAGAAAACTGAGGTAGAAGATGCAGATATGCTTGAGAGTGAAGAATGTGAAGCT TCTAAAGGCTACTATCTCACTAAAGCCTTGACTGGACATAACATGTCAGAAGCTCTTGTCACTGAAGCAGAGAATATGAAATGCCTTCAA TTTTCCAAGGACGTTATTATTAGTGACACAAAAGACTATTTTATGTCGAAGACTCTTGGCATTGGGAGACTGAAAAGGCCCTCCTTCTTA GATGATCCACTGTATGGTATCAGTGTGAGCCTTTCATCAGAAGACCAACATCTGAAACTCAGTTCTCCAGAGAATACAATAGCAGATGAG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_EHD4_ENST00000220325_chr15_42211408_-_FSIP1_ENST00000350221_chr15_39910446_-_2415nt CCAGCGCGGCCGGGGCGGCTCAGTGCGAGCCGGGGAGAGTCGAACCCGGAGCAGGGTCCCATCCGAGCGTGGACTGGCGGCAGGATGTTC AGCTGGATGGGGCGGCAGGCGGGCGGGCGCGAACGCGCTGGCGGCGCGGACGCGGTGCAGACGGTGACGGGCGGGCTGCGCTCGCTCTAC CTGCGCAAGGTGCTGCCGCTGGAGGAGGCGTACCGCTTCCACGAGTTCCACTCGCCTGCGCTGGAGGACGCCGACTTCGAGAACAAGCCC ATGATCCTGCTGGTGGGCCAGTACAGCACCGGCAAGACCACCTTCATCAGATACCTACTGGAGCAGGATTTCCCAGGCATGAGGATTGGT CCGGAGCCCACCACAGACTCCTTCATCGCCGTGATGTATGGAGAGACTGAGGGCAGCACCCCAGGGAATGCTTTAGTCGTGGACCCCAAA AAGCCGTTTAGAAAGCTCAGTCGCTTTGGAAACGCTTTCCTGAATCGATTCATGTGCTCACAGCTCCCCAATCAGGTCCTGAAGAGCATC AGCGTCATCGACAGCCCCGGCATCCTTTCTGGGGAGAAGCAGCGCATCAGCCGAGGCTATGACTTCTGCCAGGTCCTGCAGTGGTTTGCC GAGAGGGTGGACAGGATCATCCTGCTCTTTGACGCTCACAAGCTGGACATCTCAGATGAATTCTCAGAGGCCATCAAGGCCTTCCGGGGC CAGGACGACAAGATCCGTGTCGTGCTGAACAAGGCCGACCAAGTGGACACGCAGCAGCTGATGCGGGTCTACGGGGCCCTCATGTGGTCC CTAGGCAAGGTCATCAACACGCCCGAGGTACTGCGCGTCTACATTGGCTCCTTCTGGGCGCAGCCCCTGCAGAACACGGACAACCGCCGG CTCTTCGAGGCTGAGGCCCAGGACCTCTTTAGAGACATCCAGAGCCTCCCCCAGAAGGCAGCGGTGCGCAAGCTCAACGACCTCATCAAG CGAGCGAGGCTGGCCAAGTTAGAGTCCACATCATGTCTCTCTGAAGAACAGTTAAAGTGTCTTCTGGATGAATGCATACTTAAACAAAAA TCCATCATTAAACTTTCTTCAGAAAGAAAAAAGGAAGACATTGAGGACGTAACACCTGTGTTCCCCCAGCTTTCCAGGTCCATCATCTCT AAATTGCTAAATGAATCAGAAACAAAGGTCCAGAAAACTGAGGTAGAAGATGCAGATATGCTTGAGAGTGAAGAATGTGAAGCTTCTAAA GGCTACTATCTCACTAAAGCCTTGACTGGACATAACATGTCAGAAGCTCTTGTCACTGAAGCAGAGAATATGAAATGCCTTCAATTTTCC AAGGACGTTATTATTAGTGACACAAAAGACTATTTTATGTCGAAGACTCTTGGCATTGGGAGACTGAAAAGGCCCTCCTTCTTAGATGAT CCACTGTATGGTATCAGTGTGAGCCTTTCATCAGAAGACCAACATCTGAAACTCAGTTCTCCAGAGAATACAATAGCAGATGAGCAGGAG ACTAAAGATGCAGCAGAAGAATGTAAAGAACCCTAATCAAGGACTTGCTGGGTGTGCTTTTCAGAAAGTTGGTAATGAAGTTAAATTAAA TTTCTTATTGAATTATTTGAATTCAATGAATGCACTGCAGAGACTATTCTTTATTGATTTTGACATTTGGAGTCGCTCTTTGTGGATTAT ATTTCCTTGATATTTTTGAGACTTGGGGTGTAATTGTTCAGTGGTTTTTGCTCATTAAAATTTCTGGGACCATTGTTTATAAATTTATTG CTAATCTTACAGTATTAGGATTCATTATAAAAACCAACATTTTAATGTATACGTGTTAGGGTAAAACTCGTTGAAGTGCTGTGATTGTCC TGTATTCAATTTTGTATGTTTCACCTCTACTGTGATTCAGACAGATCATGGTGGTCACTGGGAATTTTTGCTGTGGCCCTGCTTTTCCTT CTTCCCACTTGTCTCATGTCTGTGAAACTGGTACAACCTGCCATAAGATGAAATGAATTGTCTCAACAAAGCAATATTAGAAGAGCCTTT ACTATCTTATTGGTGATGACACGTTTCTTAAGTAGGAGTTTGAGTGAATTATTTGATATATTACTTTGTTAATAATAGTTAACAATAGTT TCTTATTTTCTTTCAGAGTTTGGGCCTTTTAGATTGCATCAAATAAAGATGAGCTACTTTAAAAGACAGTCTGCGGTACTATTTGAAGAG AGATGGTTTAGTTACAAGTCAGTAACTTAGATTCATGAGAAAATTTTGTGTTGACATTCCATAAGATGAGTTGGCATTAGAATTGGAAGT |
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FusionGenePPI for EHD4_FSIP1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
EHD4 | STYXL1, DGKQ, EHD1, RASGRF1, AFP, ADSL, SZRD1, CTPS2, AASDHPPT, GTF3C4, HIST1H2AB, NOL3, PLCG1, PSMG1, RPL38, ZC3HC1, LRSAM1, MTMR2, NT5C2, UBA2, CCDC8, EGFR, TGFBR2, FSD1, DDX19B, HEPACAM2, C19orf54, DDOST, STX7, UQCRC2, WARS, NTRK1, CLTC, MCM2, SNW1, CDC5L, CDH1, PTPRM, RBSN, EXOC8, VWA5A, IQCF1, TNFRSF13B, OLFM3, TPCN2, TRIM11, NTRK3, PCDHB16, TMEM52B | FSIP1 | AKAP4, APP, PTPN9 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for EHD4_FSIP1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for EHD4_FSIP1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |