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Fusion gene ID: 10935 |
FusionGeneSummary for EDF1_DPP7 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: EDF1_DPP7 | Fusion gene ID: 10935 | Hgene | Tgene | Gene symbol | EDF1 | DPP7 | Gene ID | 8721 | 29952 |
| Gene name | endothelial differentiation related factor 1 | dipeptidyl peptidase 7 | |
| Synonyms | CFAP280|EDF-1|MBF1 | DPP2|DPPII|QPP | |
| Cytomap | 9q34.3 | 9q34.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | endothelial differentiation-related factor 1multiprotein bridging factor 1 | dipeptidyl peptidase 2DPP IIcarboxytripeptidasedipeptidyl aminopeptidase IIdipeptidyl arylamidase IIdipeptidyl-peptidase IIquiescent cell proline dipeptidase | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | O60869 | Q9UHL4 | |
| Ensembl transtripts involved in fusion gene | ENST00000371649, ENST00000224073, ENST00000371648, | ENST00000371579, | |
| Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 2 X 2 X 2=8 |
| # samples | 3 | 3 | |
| ** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/8*10)=1.90689059560852 | |
| Context | PubMed: EDF1 [Title/Abstract] AND DPP7 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | EDF1 | GO:0043388 | positive regulation of DNA binding | 10567391 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | STAD | TCGA-BR-7901-01A | EDF1 | chr9 | 139760633 | - | DPP7 | chr9 | 140005402 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000371649 | ENST00000371579 | EDF1 | chr9 | 139760633 | - | DPP7 | chr9 | 140005402 | - |
| In-frame | ENST00000224073 | ENST00000371579 | EDF1 | chr9 | 139760633 | - | DPP7 | chr9 | 140005402 | - |
| In-frame | ENST00000371648 | ENST00000371579 | EDF1 | chr9 | 139760633 | - | DPP7 | chr9 | 140005402 | - |
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FusionProtFeatures for EDF1_DPP7 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| EDF1 | DPP7 |
| Transcriptional coactivator stimulating NR5A1 andligand-dependent NR1H3/LXRA and PPARG transcriptional activities.Enhances the DNA-binding activity of ATF1, ATF2, CREB1 and NR5A1.Regulates nitric oxid synthase activity probably by sequesteringcalmodulin in the cytoplasm. May function in endothelial cellsdifferentiation, hormone-induced cardiomyocytes hypertrophy andlipid metabolism. {ECO:0000269|PubMed:10567391,ECO:0000269|PubMed:12040021, ECO:0000269|PubMed:15112053,ECO:0000269|PubMed:9813014}. | Plays an important role in the degradation of someoligopeptides. {ECO:0000269|PubMed:15487984}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >EDF1 | chr9:139760633 | chr9:140005402 | ENST00000224073 | - | 1 | 5 | 92_111 | 26 | 149 | DNA binding | H-T-H motif |
| Hgene | >EDF1 | chr9:139760633 | chr9:140005402 | ENST00000371648 | - | 1 | 4 | 92_111 | 26 | 140 | DNA binding | H-T-H motif |
| Hgene | >EDF1 | chr9:139760633 | chr9:140005402 | ENST00000224073 | - | 1 | 5 | 81_135 | 26 | 149 | Domain | HTH cro/C1-type |
| Hgene | >EDF1 | chr9:139760633 | chr9:140005402 | ENST00000371648 | - | 1 | 4 | 81_135 | 26 | 140 | Domain | HTH cro/C1-type |
| Hgene | >EDF1 | chr9:139760633 | chr9:140005402 | ENST00000224073 | - | 1 | 5 | 81_88 | 26 | 149 | Motif | Note=IQ motif |
| Hgene | >EDF1 | chr9:139760633 | chr9:140005402 | ENST00000371648 | - | 1 | 4 | 81_88 | 26 | 140 | Motif | Note=IQ motif |
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FusionGeneSequence for EDF1_DPP7 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_EDF1_ENST00000371649_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_95aa MAESDWDTVTVLRKKGPTAAQAKSKQIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQPALRGGP >In-frame_EDF1_ENST00000224073_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_95aa MAESDWDTVTVLRKKGPTAAQAKSKQIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQPALRGGP >In-frame_EDF1_ENST00000371648_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_95aa MAESDWDTVTVLRKKGPTAAQAKSKQIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQPALRGGP |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_EDF1_ENST00000371649_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_285nt ATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCTACGGCCGCCCAGGCCAAATCCAAGCAGATTCGGAGGAAC CTGAGTGCCTCAGTCATCGCCGTCACCATCCAGGGGGGAGCGCACCACCTCGACCTCAGAGCCTCCCACCCAGAAGATCCTGCTTCCGTG GTTGAGGCGCGGAAGCTGGAGGCCACCATCATCGGCGAGTGGGTAAAGGCAGCCAGGCGTGAGCAGCAGCCAGCTCTGCGTGGGGGGCCC >In-frame_EDF1_ENST00000224073_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_285nt ATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCTACGGCCGCCCAGGCCAAATCCAAGCAGATTCGGAGGAAC CTGAGTGCCTCAGTCATCGCCGTCACCATCCAGGGGGGAGCGCACCACCTCGACCTCAGAGCCTCCCACCCAGAAGATCCTGCTTCCGTG GTTGAGGCGCGGAAGCTGGAGGCCACCATCATCGGCGAGTGGGTAAAGGCAGCCAGGCGTGAGCAGCAGCCAGCTCTGCGTGGGGGGCCC >In-frame_EDF1_ENST00000371648_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_285nt ATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCTACGGCCGCCCAGGCCAAATCCAAGCAGATTCGGAGGAAC CTGAGTGCCTCAGTCATCGCCGTCACCATCCAGGGGGGAGCGCACCACCTCGACCTCAGAGCCTCCCACCCAGAAGATCCTGCTTCCGTG GTTGAGGCGCGGAAGCTGGAGGCCACCATCATCGGCGAGTGGGTAAAGGCAGCCAGGCGTGAGCAGCAGCCAGCTCTGCGTGGGGGGCCC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_EDF1_ENST00000371649_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_418nt CCGGACGGACGCTCGTCTTCGCCCGCCATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCTACGGCCGCCCAG GCCAAATCCAAGCAGATTCGGAGGAACCTGAGTGCCTCAGTCATCGCCGTCACCATCCAGGGGGGAGCGCACCACCTCGACCTCAGAGCC TCCCACCCAGAAGATCCTGCTTCCGTGGTTGAGGCGCGGAAGCTGGAGGCCACCATCATCGGCGAGTGGGTAAAGGCAGCCAGGCGTGAG CAGCAGCCAGCTCTGCGTGGGGGGCCCAGACTCAGCCTCTGAGCACAGGACTGGAGGGGTCTCAAGGCTCCTCATGGAGTGGGGGCTTCA >In-frame_EDF1_ENST00000224073_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_419nt GCCGGACGGACGCTCGTCTTCGCCCGCCATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCTACGGCCGCCCA GGCCAAATCCAAGCAGATTCGGAGGAACCTGAGTGCCTCAGTCATCGCCGTCACCATCCAGGGGGGAGCGCACCACCTCGACCTCAGAGC CTCCCACCCAGAAGATCCTGCTTCCGTGGTTGAGGCGCGGAAGCTGGAGGCCACCATCATCGGCGAGTGGGTAAAGGCAGCCAGGCGTGA GCAGCAGCCAGCTCTGCGTGGGGGGCCCAGACTCAGCCTCTGAGCACAGGACTGGAGGGGTCTCAAGGCTCCTCATGGAGTGGGGGCTTC >In-frame_EDF1_ENST00000371648_chr9_139760633_-_DPP7_ENST00000371579_chr9_140005402_-_399nt CGCCCGCCATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCTACGGCCGCCCAGGCCAAATCCAAGCAGATTC GGAGGAACCTGAGTGCCTCAGTCATCGCCGTCACCATCCAGGGGGGAGCGCACCACCTCGACCTCAGAGCCTCCCACCCAGAAGATCCTG CTTCCGTGGTTGAGGCGCGGAAGCTGGAGGCCACCATCATCGGCGAGTGGGTAAAGGCAGCCAGGCGTGAGCAGCAGCCAGCTCTGCGTG GGGGGCCCAGACTCAGCCTCTGAGCACAGGACTGGAGGGGTCTCAAGGCTCCTCATGGAGTGGGGGCTTCACTCAAGCAGCTGGCGGCAG |
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FusionGenePPI for EDF1_DPP7 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| EDF1 | NR5A2, NR1H3, PPARG, RXRA, TBP, NR5A1, JUN, NRL, CEBPA, MAPK6, UBE2I, IDH3G, MEOX2, MOV10, SOX4, DNAJB1, DHX29, IMPDH1, RNASEH2A, HNRNPF, HIST1H3A, EWSR1, DPPA4, NANOG, RC3H1, TRIM25 | DPP7 | SELENBP1, MYCBP, XRN1, FBXO6, CSTB, PLCG1, RIC8A, SARNP, WDR61, TRIM25 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | EDF1 | chr9:139760633 | chr9:140005402 | ENST00000224073 | - | 1 | 5 | 37_113 | 26 | 149 | NR5A2%2C PPARG and NR1H3 |
| Hgene | EDF1 | chr9:139760633 | chr9:140005402 | ENST00000371648 | - | 1 | 4 | 37_113 | 26 | 140 | NR5A2%2C PPARG and NR1H3 |
| Hgene | EDF1 | chr9:139760633 | chr9:140005402 | ENST00000224073 | - | 1 | 5 | 69_108 | 26 | 149 | TBP and NR5A1 |
| Hgene | EDF1 | chr9:139760633 | chr9:140005402 | ENST00000371648 | - | 1 | 4 | 69_108 | 26 | 140 | TBP and NR5A1 |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for EDF1_DPP7 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for EDF1_DPP7 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | DPP7 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Tgene | DPP7 | C0027540 | Necrosis | 1 | CTD_human |
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