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Fusion gene ID: 10775 |
FusionGeneSummary for DYNC1LI2_NAE1 |
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Fusion gene information | Fusion gene name: DYNC1LI2_NAE1 | Fusion gene ID: 10775 | Hgene | Tgene | Gene symbol | DYNC1LI2 | NAE1 | Gene ID | 1783 | 8883 |
Gene name | dynein cytoplasmic 1 light intermediate chain 2 | NEDD8 activating enzyme E1 subunit 1 | |
Synonyms | DNCLI2|LIC2 | A-116A10.1|APPBP1|HPP1|ula-1 | |
Cytomap | 16q22.1 | 16q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | cytoplasmic dynein 1 light intermediate chain 2LIC-2LIC53/55dynein light intermediate chain 2, cytosolicdynein, cytoplasmic, light intermediate polypeptide 2 | NEDD8-activating enzyme E1 regulatory subunitAPP-BP1NEDD8-activating enzyme E1 subunitamyloid beta precursor protein binding protein 1, 59kDaamyloid beta precursor protein-binding protein 1, 59 kDaamyloid beta precursor protein-binding protein 1, 59k | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O43237 | Q13564 | |
Ensembl transtripts involved in fusion gene | ENST00000258198, ENST00000379482, ENST00000443351, ENST00000570201, ENST00000440564, | ENST00000359087, ENST00000290810, ENST00000379463, ENST00000394074, ENST00000564040, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 3 X 4 X 2=24 |
# samples | 4 | 4 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: DYNC1LI2 [Title/Abstract] AND NAE1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | NAE1 | GO:0033314 | mitotic DNA replication checkpoint | 10722740 |
Tgene | NAE1 | GO:0042981 | regulation of apoptotic process | 14557245 |
Tgene | NAE1 | GO:0043523 | regulation of neuron apoptotic process | 10722740 |
Tgene | NAE1 | GO:0045116 | protein neddylation | 10207026|12740388 |
Tgene | NAE1 | GO:0051402 | neuron apoptotic process | 14557245 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | ESCA | TCGA-VR-A8Q7-01A | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000258198 | ENST00000359087 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000258198 | ENST00000290810 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000258198 | ENST00000379463 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000258198 | ENST00000394074 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
5CDS-intron | ENST00000258198 | ENST00000564040 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000379482 | ENST00000359087 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000379482 | ENST00000290810 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000379482 | ENST00000379463 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000379482 | ENST00000394074 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
5CDS-intron | ENST00000379482 | ENST00000564040 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000443351 | ENST00000359087 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000443351 | ENST00000290810 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000443351 | ENST00000379463 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
In-frame | ENST00000443351 | ENST00000394074 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
5CDS-intron | ENST00000443351 | ENST00000564040 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000570201 | ENST00000359087 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000570201 | ENST00000290810 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000570201 | ENST00000379463 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000570201 | ENST00000394074 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-intron | ENST00000570201 | ENST00000564040 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000440564 | ENST00000359087 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000440564 | ENST00000290810 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000440564 | ENST00000379463 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-3CDS | ENST00000440564 | ENST00000394074 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
intron-intron | ENST00000440564 | ENST00000564040 | DYNC1LI2 | chr16 | 66783100 | - | NAE1 | chr16 | 66839929 | - |
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FusionProtFeatures for DYNC1LI2_NAE1 |
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Hgene | Tgene |
DYNC1LI2 | NAE1 |
Acts as one of several non-catalytic accessorycomponents of the cytoplasmic dynein 1 complex that are thought tobe involved in linking dynein to cargos and to adapter proteinsthat regulate dynein function. Cytoplasmic dynein 1 acts as amotor for the intracellular retrograde motility of vesicles andorganelles along microtubules. May play a role in binding dyneinto membranous organelles or chromosomes. | Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme.E1 activates NEDD8 by first adenylating its C-terminal glycineresidue with ATP, thereafter linking this residue to the sidechain of the catalytic cysteine, yielding a NEDD8-UBA3 thioesterand free AMP. E1 finally transfers NEDD8 to the catalytic cysteineof UBE2M. Necessary for cell cycle progression through the S-Mcheckpoint. Overexpression of NAE1 causes apoptosis throughderegulation of NEDD8 conjugation. {ECO:0000269|PubMed:10207026,ECO:0000269|PubMed:10722740, ECO:0000269|PubMed:12740388}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | DYNC1LI2 | chr16:66783100 | chr16:66839929 | ENST00000258198 | - | 3 | 13 | 61_68 | 99 | 493 | Nucleotide binding | ATP |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for DYNC1LI2_NAE1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for DYNC1LI2_NAE1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
DYNC1LI2 | DMTN, ELAVL1, CUL3, APP, DYNC1H1, DYNC1LI1, DYNLT1, DYNLT3, DYNC1I2, DYNLRB1, FLNA, PRUNE2, DYNLL1, EIF3K, GNB2L1, HNRNPA2B1, RPSA, NMT1, RPS23, RPS26, RPS5, YBX1, TRIM58, C2CD2, CLUH, NTRK1, NINL, NIN, SNW1, CDC5L, DYNC1I1, PCBP4 | NAE1 | UBE2M, UBQLN4, APP, UBA3, TRIP12, UIMC1, NEDD8, TP53BP2, ALG8, SREBF2, APEX1, CAPN2, DCPS, MCTS1, MSN, ATIC, CAMK1D, NUCB2, PAFAH1B2, PDIA4, PROSC, RAP1GDS1, TATDN1, TUFM, NSFL1C, PAPSS1, PCYT2, PPP1R2, TXNRD1, XPO1, PINK1, UBE2F, ZBTB44, EXOC6, NUDCD3, PLOD1, UBA5, XRCC6, NTRK1, KRAS |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | NAE1 | chr16:66783100 | chr16:66839929 | ENST00000290810 | - | 16 | 20 | 331_344 | 443 | 535 | UBA3 |
Tgene | NAE1 | chr16:66783100 | chr16:66839929 | ENST00000379463 | - | 17 | 21 | 331_344 | 437 | 529 | UBA3 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for DYNC1LI2_NAE1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DYNC1LI2_NAE1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | DYNC1LI2 | C0043094 | Weight Gain | 1 | CTD_human |