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Fusion gene ID: 10438 |
FusionGeneSummary for DOPEY1_RNF144B |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: DOPEY1_RNF144B | Fusion gene ID: 10438 | Hgene | Tgene | Gene symbol | DOPEY1 | RNF144B | Gene ID | 23033 | 255488 |
| Gene name | dopey family member 1 | ring finger protein 144B | |
| Synonyms | DOP1|KIAA1117|dJ202D23.2 | IBRDC2|PIR2|bA528A10.3|p53RFP | |
| Cytomap | 6q14.1 | 6p22.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein dopey-1homolog of yeast DOP1 | E3 ubiquitin-protein ligase RNF144BIBR domain containing 2IBR domain-containing protein 2p53-inducible RING finger protein | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q5JWR5 | Q7Z419 | |
| Ensembl transtripts involved in fusion gene | ENST00000237163, ENST00000349129, ENST00000536812, ENST00000369739, ENST00000484282, | ENST00000429054, ENST00000259939, ENST00000486622, | |
| Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 4 X 4 X 3=48 |
| # samples | 2 | 4 | |
| ** MAII score | log2(2/4*10)=2.32192809488736 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: DOPEY1 [Title/Abstract] AND RNF144B [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | RNF144B | GO:0006511 | ubiquitin-dependent protein catabolic process | 12853982 |
| Tgene | RNF144B | GO:0043066 | negative regulation of apoptotic process | 20300062 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | COAD | TCGA-AA-3685-01A | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-intron | ENST00000237163 | ENST00000429054 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-5UTR | ENST00000237163 | ENST00000259939 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-3UTR | ENST00000237163 | ENST00000486622 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-intron | ENST00000349129 | ENST00000429054 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-5UTR | ENST00000349129 | ENST00000259939 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-3UTR | ENST00000349129 | ENST00000486622 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-intron | ENST00000536812 | ENST00000429054 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-5UTR | ENST00000536812 | ENST00000259939 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| 5UTR-3UTR | ENST00000536812 | ENST00000486622 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| intron-intron | ENST00000369739 | ENST00000429054 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| intron-5UTR | ENST00000369739 | ENST00000259939 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| intron-3UTR | ENST00000369739 | ENST00000486622 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| intron-intron | ENST00000484282 | ENST00000429054 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| intron-5UTR | ENST00000484282 | ENST00000259939 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
| intron-3UTR | ENST00000484282 | ENST00000486622 | DOPEY1 | chr6 | 83777498 | + | RNF144B | chr6 | 18399730 | + |
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FusionProtFeatures for DOPEY1_RNF144B |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| DOPEY1 | RNF144B |
| May be involved in protein traffic between late Golgiand early endosomes. {ECO:0000250}. | E3 ubiquitin-protein ligase which accepts ubiquitin fromE2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form ofa thioester and then directly transfers the ubiquitin to targetedsubstrates such as LCMT2, thereby promoting their degradation.Induces apoptosis via a p53/TP53-dependent but caspase-independentmechanism. However, its overexpression also produces a decrease ofthe ubiquitin-dependent stability of BAX, a pro-apoptotic protein,ultimately leading to protection of cell death; But, it is not ananti-apoptotic protein per se. {ECO:0000269|PubMed:12853982,ECO:0000269|PubMed:20300062}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for DOPEY1_RNF144B |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for DOPEY1_RNF144B |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| DOPEY1 | EGFR, VAPB | RNF144B | UBE2L6, UBE2U, UBE2Z, UBE2L3, UBE2I, UBE2T, CDKN1A, BAX, ELAVL1, USP2, USP15, PAN2, TP63, SHMT2, MOV10, NXF1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for DOPEY1_RNF144B |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DOPEY1_RNF144B |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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