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Fusion gene ID: 10231 |
FusionGeneSummary for DNAJC17_CIB2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: DNAJC17_CIB2 | Fusion gene ID: 10231 | Hgene | Tgene | Gene symbol | DNAJC17 | CIB2 | Gene ID | 55192 | 10518 |
| Gene name | DnaJ heat shock protein family (Hsp40) member C17 | calcium and integrin binding family member 2 | |
| Synonyms | - | DFNB48|KIP2|USH1J | |
| Cytomap | 15q15.1 | 15q25.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | dnaJ homolog subfamily C member 17DnaJ (Hsp40) homolog, subfamily C, member 17 | calcium and integrin-binding family member 2DNA-dependent protein kinase catalytic subunit-interacting protein 2 | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q9NVM6 | O75838 | |
| Ensembl transtripts involved in fusion gene | ENST00000220496, ENST00000558727, | ENST00000258930, ENST00000539011, ENST00000557846, ENST00000560618, | |
| Fusion gene scores | * DoF score | 5 X 2 X 5=50 | 5 X 2 X 4=40 |
| # samples | 7 | 5 | |
| ** MAII score | log2(7/50*10)=0.485426827170242 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/40*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: DNAJC17 [Title/Abstract] AND CIB2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | CIB2 | GO:0007204 | positive regulation of cytosolic calcium ion concentration | 23023331|26173970 |
| Tgene | CIB2 | GO:0071318 | cellular response to ATP | 23023331|26173970 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-55-1592-01A | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000220496 | ENST00000258930 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| 5CDS-intron | ENST00000220496 | ENST00000539011 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| 5CDS-intron | ENST00000220496 | ENST00000557846 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| 5CDS-intron | ENST00000220496 | ENST00000560618 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| intron-3CDS | ENST00000558727 | ENST00000258930 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| intron-intron | ENST00000558727 | ENST00000539011 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| intron-intron | ENST00000558727 | ENST00000557846 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
| intron-intron | ENST00000558727 | ENST00000560618 | DNAJC17 | chr15 | 41099567 | - | CIB2 | chr15 | 78416081 | - |
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FusionProtFeatures for DNAJC17_CIB2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| DNAJC17 | CIB2 |
| May negatively affect PAX8-induced thyroglobulin/TGtranscription. {ECO:0000250|UniProtKB:Q91WT4}. | Calcium-binding protein critical for properphotoreceptor cell maintenance and function. Plays a role inintracellular calcium homeostasis by decreasing ATP-inducedcalcium release (PubMed:23023331, PubMed:26173970,PubMed:26426422). May be involved in the mechanotransductionprocess (By similarity). {ECO:0000250,ECO:0000269|PubMed:23023331, ECO:0000269|PubMed:26173970,ECO:0000269|PubMed:26426422}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >CIB2 | chr15:41099567 | chr15:78416081 | ENST00000258930 | - | 0 | 6 | 116_127 | 17 | 188 | Calcium binding | 1 |
| Tgene | >CIB2 | chr15:41099567 | chr15:78416081 | ENST00000258930 | - | 0 | 6 | 157_168 | 17 | 188 | Calcium binding | 2 |
| Tgene | >CIB2 | chr15:41099567 | chr15:78416081 | ENST00000258930 | - | 0 | 6 | 103_138 | 17 | 188 | Domain | EF-hand 2 |
| Tgene | >CIB2 | chr15:41099567 | chr15:78416081 | ENST00000258930 | - | 0 | 6 | 144_179 | 17 | 188 | Domain | EF-hand 3 |
| Tgene | >CIB2 | chr15:41099567 | chr15:78416081 | ENST00000258930 | - | 0 | 6 | 66_101 | 17 | 188 | Domain | EF-hand 1 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >DNAJC17 | chr15:41099567 | chr15:78416081 | ENST00000220496 | - | 1 | 11 | 111_117 | 26 | 305 | Compositional bias | Note=Poly-Glu |
| Hgene | >DNAJC17 | chr15:41099567 | chr15:78416081 | ENST00000220496 | - | 1 | 11 | 11_76 | 26 | 305 | Domain | J |
| Hgene | >DNAJC17 | chr15:41099567 | chr15:78416081 | ENST00000220496 | - | 1 | 11 | 178_249 | 26 | 305 | Domain | Note=RRM |
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FusionGeneSequence for DNAJC17_CIB2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_DNAJC17_ENST00000220496_chr15_41099567_-_CIB2_ENST00000258930_chr15_78416081_-_197aa MAVTKELLQMDLYALLGIEEKAADKEDCTFFNKKDILKLHSRFYELAPNLVPMDYRKSPIVHVPMSLIIQMPELRENPFKERIVAAFSED GEGNLTFNDFVDMFSVLCESAPRELKANYAFKIYDFNTDNFICKEDLELTLARLTKSELDEEEVVLVCDKVIEEADLDGDGKLGFADFED |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_DNAJC17_ENST00000220496_chr15_41099567_-_CIB2_ENST00000258930_chr15_78416081_-_591nt ATGGCAGTGACCAAGGAGCTCTTACAGATGGACCTGTACGCGCTGCTAGGCATTGAGGAGAAGGCAGCGGACAAAGAGGACTGCACCTTC TTCAATAAGAAGGACATCCTCAAGCTGCATTCGCGATTCTATGAGCTGGCCCCCAACCTCGTCCCAATGGACTACAGGAAGAGCCCCATC GTCCACGTGCCCATGAGCCTCATCATCCAGATGCCAGAGCTCCGGGAGAATCCCTTCAAAGAAAGGATCGTGGCGGCGTTTTCCGAGGAT GGTGAGGGGAACCTCACTTTCAACGACTTTGTGGACATGTTTTCCGTGCTCTGCGAGTCGGCTCCCCGAGAGCTCAAGGCAAACTATGCC TTCAAGATCTATGACTTCAACACTGACAACTTCATCTGCAAGGAGGACCTGGAGCTGACGCTGGCCCGGCTCACTAAGTCAGAGCTGGAT GAGGAGGAGGTGGTGCTTGTGTGCGACAAGGTCATTGAGGAGGCTGACTTGGACGGTGACGGCAAGCTGGGCTTTGCTGACTTCGAGGAC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_DNAJC17_ENST00000220496_chr15_41099567_-_CIB2_ENST00000258930_chr15_78416081_-_1327nt AGTTGTAGTACGAATCCGTCAGGCCGGAACCATGGCAGTGACCAAGGAGCTCTTACAGATGGACCTGTACGCGCTGCTAGGCATTGAGGA GAAGGCAGCGGACAAAGAGGACTGCACCTTCTTCAATAAGAAGGACATCCTCAAGCTGCATTCGCGATTCTATGAGCTGGCCCCCAACCT CGTCCCAATGGACTACAGGAAGAGCCCCATCGTCCACGTGCCCATGAGCCTCATCATCCAGATGCCAGAGCTCCGGGAGAATCCCTTCAA AGAAAGGATCGTGGCGGCGTTTTCCGAGGATGGTGAGGGGAACCTCACTTTCAACGACTTTGTGGACATGTTTTCCGTGCTCTGCGAGTC GGCTCCCCGAGAGCTCAAGGCAAACTATGCCTTCAAGATCTATGACTTCAACACTGACAACTTCATCTGCAAGGAGGACCTGGAGCTGAC GCTGGCCCGGCTCACTAAGTCAGAGCTGGATGAGGAGGAGGTGGTGCTTGTGTGCGACAAGGTCATTGAGGAGGCTGACTTGGACGGTGA CGGCAAGCTGGGCTTTGCTGACTTCGAGGACATGATTGCCAAGGCCCCTGACTTCCTCAGCACTTTCCACATCCGGATCTGAGGACACTG CCGAGGCTGTAGGGGCCTAGAAGTCCACCATCCTGCCCTGCAGTCACATGGGTGTGGCCTCCAAGCTCCCCAGGAAAGCAGTGGCAGCCT CTGGGGTTTACACCACAAATATATCCTGTGGCCCTTTCAGCAAAAAAAAAACCTTAACCAGGAAGGGGGCCTGTGAAGGTTAGGACCCTT CCCACAGCCCCGCTGTGGTCCAGCCCCGGGACCCATGGCCTCTCTCCAGGCCCTCCGCACCCCGCCCCATGCCCCAGTCCTTTCCTACTC CAGAAATGCTCCCCACCCCCCCAAAGAGGGAAAAGCAGATAACCCAACAGGAGGTGGTGGGGTCTGACGTGTCCAAGTGCTGGCAGACAC CCTGGTCACCCAGGACAGAGCGGAAAAAAAAAAAAGAGGTCAGGGTTTTAACGAGCTATGCAATCTTTTTCCAAAACCCAAGGTTGGGCT GCTTCCCACCCCTGCCTGTTCCCCTTCTCCCGGCCTCCTTCACAATGTGAAGCTGTGGGTGCAGTGGGCCCAAGGGCTCTTGCTCCTGTC TCTGCCTCTGGGTCATGAGTACCACCCTGCCTGCCTCCCCAACACCGTGGAATCCTCACTGGTGTGCTGTCCACAGATTTGTGAACTCCT |
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FusionGenePPI for DNAJC17_CIB2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| DNAJC17 | PTH1R, C1orf123, C12orf10, DHX29, ELAC2, HSPA5, KIN, TRMT6, HSPA14, HSPA9, HSPH1, HYOU1, HIST1H2BG | CIB2 | EMC2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for DNAJC17_CIB2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | CIB2 | O75838 | DB11093 | Calcium Citrate | Calcium and integrin-binding family member 2 | small molecule | approved |
| Tgene | CIB2 | O75838 | DB11348 | Calcium Phosphate | Calcium and integrin-binding family member 2 | small molecule | approved |
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RelatedDiseases for DNAJC17_CIB2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | CIB2 | C1836199 | DEAFNESS, AUTOSOMAL RECESSIVE 48 | 3 | UNIPROT |
| Tgene | CIB2 | C3553944 | USHER SYNDROME, TYPE IJ | 1 | CTD_human;UNIPROT |
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