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Fusion gene ID: 10224 |
FusionGeneSummary for DNAJC11_LDB2 |
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Fusion gene information | Fusion gene name: DNAJC11_LDB2 | Fusion gene ID: 10224 | Hgene | Tgene | Gene symbol | DNAJC11 | LDB2 | Gene ID | 55735 | 9079 |
Gene name | DnaJ heat shock protein family (Hsp40) member C11 | LIM domain binding 2 | |
Synonyms | dJ126A5.1 | CLIM1|LDB-2|LDB1 | |
Cytomap | 1p36.31 | 4p15.32 | |
Type of gene | protein-coding | protein-coding | |
Description | dnaJ homolog subfamily C member 11DnaJ (Hsp40) homolog, subfamily C, member 11novel DnaJ domain-containing protein | LIM domain-binding protein 2LIM binding domain 2LIM domain-binding factor CLIM1LIM domain-binding factor-2carboxyl-terminal LIM domain-binding protein 1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9NVH1 | O43679 | |
Ensembl transtripts involved in fusion gene | ENST00000465508, ENST00000349363, ENST00000377577, ENST00000294401, ENST00000542246, ENST00000377573, | ENST00000515064, ENST00000441778, ENST00000304523, ENST00000502640, ENST00000503178, ENST00000503829, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 5 X 5 X 4=100 |
# samples | 2 | 5 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(5/100*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: DNAJC11 [Title/Abstract] AND LDB2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AW935247 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000465508 | ENST00000515064 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000465508 | ENST00000441778 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000465508 | ENST00000304523 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000465508 | ENST00000502640 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000465508 | ENST00000503178 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000465508 | ENST00000503829 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000349363 | ENST00000515064 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000349363 | ENST00000441778 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000349363 | ENST00000304523 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000349363 | ENST00000502640 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000349363 | ENST00000503178 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000349363 | ENST00000503829 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377577 | ENST00000515064 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377577 | ENST00000441778 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377577 | ENST00000304523 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377577 | ENST00000502640 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377577 | ENST00000503178 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377577 | ENST00000503829 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000294401 | ENST00000515064 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000294401 | ENST00000441778 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000294401 | ENST00000304523 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000294401 | ENST00000502640 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000294401 | ENST00000503178 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000294401 | ENST00000503829 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000542246 | ENST00000515064 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000542246 | ENST00000441778 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000542246 | ENST00000304523 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000542246 | ENST00000502640 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000542246 | ENST00000503178 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000542246 | ENST00000503829 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377573 | ENST00000515064 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377573 | ENST00000441778 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377573 | ENST00000304523 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377573 | ENST00000502640 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377573 | ENST00000503178 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
intron-intron | ENST00000377573 | ENST00000503829 | DNAJC11 | chr1 | 6713367 | - | LDB2 | chr4 | 16785305 | - |
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FusionProtFeatures for DNAJC11_LDB2 |
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Hgene | Tgene |
DNAJC11 | LDB2 |
Isoform 1: Required for mitochondrial inner membraneorganization. Seems to function through its association with theMICOS complex and the mitochondrial outer membrane sortingassembly machinery (SAM) complex. {ECO:0000269|PubMed:25111180,ECO:0000305}. | Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for DNAJC11_LDB2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for DNAJC11_LDB2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for DNAJC11_LDB2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DNAJC11_LDB2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |