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Fusion gene ID: 1008 |
FusionGeneSummary for AFF1_TRIM33 |
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Fusion gene information | Fusion gene name: AFF1_TRIM33 | Fusion gene ID: 1008 | Hgene | Tgene | Gene symbol | AFF1 | TRIM33 | Gene ID | 4299 | 51592 |
Gene name | AF4/FMR2 family member 1 | tripartite motif containing 33 | |
Synonyms | AF4|MLLT2|PBM1 | ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA | |
Cytomap | 4q21.3-q22.1 | 1p13.2 | |
Type of gene | protein-coding | protein-coding | |
Description | AF4/FMR2 family member 1ALL1-fused gene from chromosome 4 proteinmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2pre-B-cell monocytic leukemia partner 1proto-oncogene AF4 | E3 ubiquitin-protein ligase TRIM33RET-fused gene 7 proteinRING-type E3 ubiquitin transferase TRIM33TIF1-gammaectodermin homologprotein Rfg7transcriptional intermediary factor 1 gamma | |
Modification date | 20180523 | 20180520 | |
UniProtAcc | P51825 | Q9UPN9 | |
Ensembl transtripts involved in fusion gene | ENST00000395146, ENST00000307808, ENST00000544085, ENST00000511996, | ENST00000358465, ENST00000369543, ENST00000450349, ENST00000476908, | |
Fusion gene scores | * DoF score | 16 X 29 X 8=3712 | 2 X 2 X 1=4 |
# samples | 40 | 2 | |
** MAII score | log2(40/3712*10)=-3.21412480535285 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: AFF1 [Title/Abstract] AND TRIM33 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | TRIM33 | GO:0016567 | protein ubiquitination | 19135894 |
Tgene | TRIM33 | GO:0017015 | regulation of transforming growth factor beta receptor signaling pathway | 19135894 |
Tgene | TRIM33 | GO:0030514 | negative regulation of BMP signaling pathway | 19135894 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF368587 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000395146 | ENST00000358465 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000395146 | ENST00000369543 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000395146 | ENST00000450349 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000395146 | ENST00000476908 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000307808 | ENST00000358465 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000307808 | ENST00000369543 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000307808 | ENST00000450349 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000307808 | ENST00000476908 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000544085 | ENST00000358465 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000544085 | ENST00000369543 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000544085 | ENST00000450349 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000544085 | ENST00000476908 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000511996 | ENST00000358465 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000511996 | ENST00000369543 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000511996 | ENST00000450349 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
intron-intron | ENST00000511996 | ENST00000476908 | AFF1 | chr4 | 88040933 | + | TRIM33 | chr1 | 115026919 | + |
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FusionProtFeatures for AFF1_TRIM33 |
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Hgene | Tgene |
AFF1 | TRIM33 |
Acts as an E3 ubiquitin-protein ligase. Promotes SMAD4ubiquitination, nuclear exclusion and degradation via theubiquitin proteasome pathway. According to PubMed:16751102, doesnot promote a decrease in the level of endogenous SMAD4. May actas a transcriptional repressor. Inhibits the transcriptionalresponse to TGF-beta/BMP signaling cascade. Plays a role in thecontrol of cell proliferation. Its association with SMAD2 andSMAD3 stimulates erythroid differentiation of hematopoieticstem/progenitor (By similarity). Monoubiquitinates SMAD4 and actsas an inhibitor of SMAD4-dependent TGF-beta/BMP signaling cascade(Monoubiquitination of SMAD4 hampers its ability to form a stablecomplex with activated SMAD2/3 resulting in inhibition of TGF-beta/BMP signaling cascade). {ECO:0000250,ECO:0000269|PubMed:10022127, ECO:0000269|PubMed:15820681,ECO:0000269|PubMed:16751102, ECO:0000269|PubMed:19135894}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for AFF1_TRIM33 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for AFF1_TRIM33 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for AFF1_TRIM33 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AFF1_TRIM33 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |