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Fusion gene ID: 10050 |
FusionGeneSummary for DKK3_EVA1A |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: DKK3_EVA1A | Fusion gene ID: 10050 | Hgene | Tgene | Gene symbol | DKK3 | EVA1A | Gene ID | 27122 | 84141 |
| Gene name | dickkopf WNT signaling pathway inhibitor 3 | eva-1 homolog A, regulator of programmed cell death | |
| Synonyms | REIC|RIG | FAM176A|TMEM166 | |
| Cytomap | 11p15.3 | 2p12 | |
| Type of gene | protein-coding | protein-coding | |
| Description | dickkopf-related protein 3RIG-like 5-6RIG-like 7-1dickkopf 3 homologdickkopf homolog 3dickkopf-3dkk-3hDkk-3regulated in glioma | protein eva-1 homolog Afamily with sequence similarity 176, member Aprotein FAM176Atransmembrane protein 166 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9UBP4 | Q9H8M9 | |
| Ensembl transtripts involved in fusion gene | ENST00000527132, ENST00000396505, ENST00000326932, ENST00000525493, ENST00000450094, | ENST00000490746, ENST00000393913, ENST00000233712, ENST00000410113, ENST00000410071, ENST00000410010, | |
| Fusion gene scores | * DoF score | 3 X 4 X 2=24 | 2 X 2 X 1=4 |
| # samples | 5 | 2 | |
| ** MAII score | log2(5/24*10)=1.05889368905357 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/4*10)=2.32192809488736 | |
| Context | PubMed: DKK3 [Title/Abstract] AND EVA1A [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | DKK3 | GO:0032348 | negative regulation of aldosterone biosynthetic process | 16981135 |
| Hgene | DKK3 | GO:0045892 | negative regulation of transcription, DNA-templated | 16981135 |
| Hgene | DKK3 | GO:0090090 | negative regulation of canonical Wnt signaling pathway | 12857724 |
| Hgene | DKK3 | GO:2000065 | negative regulation of cortisol biosynthetic process | 16981135 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BQ021491 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000527132 | ENST00000490746 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000527132 | ENST00000393913 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000527132 | ENST00000233712 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000527132 | ENST00000410113 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000527132 | ENST00000410071 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000527132 | ENST00000410010 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000396505 | ENST00000490746 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000396505 | ENST00000393913 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000396505 | ENST00000233712 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000396505 | ENST00000410113 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000396505 | ENST00000410071 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000396505 | ENST00000410010 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000326932 | ENST00000490746 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000326932 | ENST00000393913 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000326932 | ENST00000233712 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000326932 | ENST00000410113 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000326932 | ENST00000410071 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000326932 | ENST00000410010 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000525493 | ENST00000490746 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000525493 | ENST00000393913 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000525493 | ENST00000233712 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000525493 | ENST00000410113 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000525493 | ENST00000410071 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000525493 | ENST00000410010 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000450094 | ENST00000490746 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000450094 | ENST00000393913 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000450094 | ENST00000233712 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-3UTR | ENST00000450094 | ENST00000410113 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000450094 | ENST00000410071 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
| intron-intron | ENST00000450094 | ENST00000410010 | DKK3 | chr11 | 11984760 | + | EVA1A | chr2 | 75720116 | + |
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FusionProtFeatures for DKK3_EVA1A |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| DKK3 | EVA1A |
| Antagonizes canonical Wnt signaling by inhibiting LRP5/6interaction with Wnt and by forming a ternary complex with thetransmembrane protein KREMEN that promotes internalization ofLRP5/6. DKKs play an important role in vertebrate development,where they locally inhibit Wnt regulated processes such as antero-posterior axial patterning, limb development, somitogenesis andeye formation. In the adult, Dkks are implicated in bone formationand bone disease, cancer and Alzheimer disease (By similarity).{ECO:0000250}. | Acts as a regulator of programmed cell death, mediatingboth autophagy and apoptosis. {ECO:0000269|PubMed:17492404,ECO:0000269|PubMed:19029833}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for DKK3_EVA1A |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for DKK3_EVA1A |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for DKK3_EVA1A |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DKK3_EVA1A |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | DKK3 | C0036341 | Schizophrenia | 1 | PSYGENET |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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