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Fusion gene ID: 1003 |
FusionGeneSummary for AFF1_PAIP2 |
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Fusion gene information | Fusion gene name: AFF1_PAIP2 | Fusion gene ID: 1003 | Hgene | Tgene | Gene symbol | AFF1 | PAIP2 | Gene ID | 4299 | 51247 |
Gene name | AF4/FMR2 family member 1 | poly(A) binding protein interacting protein 2 | |
Synonyms | AF4|MLLT2|PBM1 | PAIP-2|PAIP2A | |
Cytomap | 4q21.3-q22.1 | 5q31.2 | |
Type of gene | protein-coding | protein-coding | |
Description | AF4/FMR2 family member 1ALL1-fused gene from chromosome 4 proteinmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2pre-B-cell monocytic leukemia partner 1proto-oncogene AF4 | polyadenylate-binding protein-interacting protein 2PABC1-interacting protein 2PABP-interacting protein 2polyA-binding protein-interacting protein 2 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P51825 | Q9BPZ3 | |
Ensembl transtripts involved in fusion gene | ENST00000395146, ENST00000307808, ENST00000544085, ENST00000511996, | ENST00000265192, ENST00000511381, ENST00000511706, ENST00000394795, ENST00000510080, | |
Fusion gene scores | * DoF score | 16 X 29 X 8=3712 | 7 X 5 X 5=175 |
# samples | 40 | 7 | |
** MAII score | log2(40/3712*10)=-3.21412480535285 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/175*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: AFF1 [Title/Abstract] AND PAIP2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PAIP2 | GO:0045947 | negative regulation of translational initiation | 11172725 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | R34011 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3UTR | ENST00000395146 | ENST00000265192 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-intron | ENST00000395146 | ENST00000511381 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-intron | ENST00000395146 | ENST00000511706 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000395146 | ENST00000394795 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000395146 | ENST00000510080 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000307808 | ENST00000265192 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-intron | ENST00000307808 | ENST00000511381 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-intron | ENST00000307808 | ENST00000511706 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000307808 | ENST00000394795 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000307808 | ENST00000510080 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000544085 | ENST00000265192 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-intron | ENST00000544085 | ENST00000511381 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-intron | ENST00000544085 | ENST00000511706 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000544085 | ENST00000394795 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
3UTR-3UTR | ENST00000544085 | ENST00000510080 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
intron-3UTR | ENST00000511996 | ENST00000265192 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
intron-intron | ENST00000511996 | ENST00000511381 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
intron-intron | ENST00000511996 | ENST00000511706 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
intron-3UTR | ENST00000511996 | ENST00000394795 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
intron-3UTR | ENST00000511996 | ENST00000510080 | AFF1 | chr4 | 88056966 | + | PAIP2 | chr5 | 138704720 | + |
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FusionProtFeatures for AFF1_PAIP2 |
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Hgene | Tgene |
AFF1 | PAIP2 |
Acts as a repressor in the regulation of translationinitiation of poly(A)-containing mRNAs. Its inhibitory activity ontranslation is mediated via its action on PABPC1. Displaces theinteraction of PABPC1 with poly(A) RNA and competes with PAIP1 forbinding to PABPC1. Its association with PABPC1 results indisruption of the cytoplasmic poly(A) RNP structure organization.{ECO:0000269|PubMed:11172725}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for AFF1_PAIP2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for AFF1_PAIP2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for AFF1_PAIP2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AFF1_PAIP2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |