	FusionGeneSummary
	FusionProtFeature
	FusionGeneSequence
	FusionGenePPI
	RelatedDrugs
	RelatedDiseases

Fusion gene ID: 8686

FusionGeneSummary for CSRP1_PALLD

Fusion gene summary

Fusion gene information	Fusion gene name: CSRP1_PALLD
	Fusion gene ID: 8686
		Hgene	Tgene
	Gene symbol	CSRP1	PALLD
	Gene ID	1465	23022
	Gene name	cysteine and glycine rich protein 1	palladin, cytoskeletal associated protein
	Synonyms	CRP\|CRP1\|CSRP\|CYRP\|D1S181E\|HEL-141\|HEL-S-286	CGI-151\|CGI151\|MYN\|PNCA1\|SIH002
	Cytomap	1q32.1	4q32.3
	Type of gene	protein-coding	protein-coding
	Description	cysteine and glycine-rich protein 1LIM-domain proteincysteine-rich protein 1epididymis luminal protein 141epididymis secretory protein Li 286	palladinmyoneurinsarcoma antigen NY-SAR-77
	Modification date	20180519	20180523
	UniProtAcc	P21291	Q8WX93
	Ensembl transtripts involved in fusion gene	ENST00000367306, ENST00000340006, ENST00000531916, ENST00000532460, ENST00000533432, ENST00000526723, ENST00000458271,	ENST00000335742, ENST00000261509, ENST00000505667, ENST00000333488, ENST00000512127, ENST00000507735,
Fusion gene scores	* DoF score	5 X 7 X 3=105	7 X 6 X 3=126
	# samples	7	7
	** MAII score	log2(7/105*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(7/126*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: CSRP1 [Title/Abstract] AND PALLD [Title/Abstract] AND fusion [Title/Abstract]
Functional or gene categories assigned by FusionGDB annotation

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner

Gene

GO ID

GO term

PubMed ID

Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Data type	Source	Cancer type	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+

* LD: Li Ding group's fusion gene list
RV: Roel Verhaak group's fusion gene list
ChiTaRs fusion database

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
5CDS-5UTR	ENST00000367306	ENST00000335742	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000367306	ENST00000261509	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000367306	ENST00000505667	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000367306	ENST00000333488	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000367306	ENST00000512127	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000367306	ENST00000507735	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000340006	ENST00000335742	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000340006	ENST00000261509	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000340006	ENST00000505667	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000340006	ENST00000333488	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000340006	ENST00000512127	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000340006	ENST00000507735	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000531916	ENST00000335742	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000531916	ENST00000261509	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000531916	ENST00000505667	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000531916	ENST00000333488	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000531916	ENST00000512127	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000531916	ENST00000507735	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000532460	ENST00000335742	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000532460	ENST00000261509	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000532460	ENST00000505667	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000532460	ENST00000333488	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000532460	ENST00000512127	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000532460	ENST00000507735	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000533432	ENST00000335742	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000533432	ENST00000261509	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000533432	ENST00000505667	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000533432	ENST00000333488	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000533432	ENST00000512127	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000533432	ENST00000507735	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000526723	ENST00000335742	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000526723	ENST00000261509	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000526723	ENST00000505667	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000526723	ENST00000333488	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000526723	ENST00000512127	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000526723	ENST00000507735	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000458271	ENST00000335742	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000458271	ENST00000261509	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000458271	ENST00000505667	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000458271	ENST00000333488	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000458271	ENST00000512127	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000458271	ENST00000507735	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+

Top

FusionProtFeatures for CSRP1_PALLD

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
CSRP1 P21291	PALLD Q8WX93

Home

Download

Statistics

Examples

Help

Contact

Fusion gene ID: 8686

FusionGeneSummary for CSRP1_PALLD

FusionProtFeatures for CSRP1_PALLD