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Fusion gene ID: 7966 |
FusionGeneSummary for COL4A5_RGAG1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: COL4A5_RGAG1 | Fusion gene ID: 7966 | Hgene | Tgene | Gene symbol | COL4A5 | RGAG1 | Gene ID | 1287 |
| Gene name | collagen type IV alpha 5 chain | ||
| Synonyms | ASLN|ATS|CA54 | ||
| Cytomap | Xq22.3 | ||
| Type of gene | protein-coding | ||
| Description | collagen alpha-5(IV) chaincollagen IV, alpha-5 polypeptidecollagen of basement membrane, alpha-5 chaincollagen, type IV, alpha 5dA149D17.3dA24A23.1 | ||
| Modification date | 20180523 | ||
| UniProtAcc | P29400 | ||
| Ensembl transtripts involved in fusion gene | ENST00000328300, ENST00000361603, ENST00000477429, | ENST00000465301, ENST00000540313, | |
| Fusion gene scores | * DoF score | 3 X 2 X 2=12 | 4 X 4 X 3=48 |
| # samples | 3 | 4 | |
| ** MAII score | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: COL4A5 [Title/Abstract] AND RGAG1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |