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Fusion gene ID: 7743 |
FusionGeneSummary for CNPY2_CNPY2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CNPY2_CNPY2 | Fusion gene ID: 7743 | Hgene | Tgene | Gene symbol | CNPY2 | CNPY2 | Gene ID | 10330 | 10330 |
| Gene name | canopy FGF signaling regulator 2 | canopy FGF signaling regulator 2 | |
| Synonyms | HP10390|MSAP|TMEM4|ZSIG9 | HP10390|MSAP|TMEM4|ZSIG9 | |
| Cytomap | 12q13.3 | 12q13.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein canopy homolog 2MIR-interacting saposin-like proteinputative secreted protein Zsig9transmembrane protein 4 | protein canopy homolog 2MIR-interacting saposin-like proteinputative secreted protein Zsig9transmembrane protein 4 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9Y2B0 | Q9Y2B0 | |
| Ensembl transtripts involved in fusion gene | ENST00000273308, ENST00000551720, | ENST00000273308, ENST00000551720, | |
| Fusion gene scores | * DoF score | 2 X 3 X 1=6 | 2 X 3 X 1=6 |
| # samples | 9 | 3 | |
| ** MAII score | log2(9/6*10)=3.90689059560852 | log2(3/6*10)=2.32192809488736 | |
| Context | PubMed: CNPY2 [Title/Abstract] AND CNPY2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | AL831869 | CNPY2 | chr12 | 56704354 | - | CNPY2 | chr12 | 56704256 | + | ||
| ChiTaRS3.1 | BE826144 | CNPY2 | chr12 | 56705195 | + | CNPY2 | chr12 | 56705155 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3UTR | ENST00000273308 | ENST00000273308 | CNPY2 | chr12 | 56704354 | - | CNPY2 | chr12 | 56704256 | + |
| intron-intron | ENST00000273308 | ENST00000551720 | CNPY2 | chr12 | 56704354 | - | CNPY2 | chr12 | 56704256 | + |
| intron-3UTR | ENST00000551720 | ENST00000273308 | CNPY2 | chr12 | 56704354 | - | CNPY2 | chr12 | 56704256 | + |
| intron-intron | ENST00000551720 | ENST00000551720 | CNPY2 | chr12 | 56704354 | - | CNPY2 | chr12 | 56704256 | + |
| intron-3CDS | ENST00000273308 | ENST00000273308 | CNPY2 | chr12 | 56705195 | + | CNPY2 | chr12 | 56705155 | - |
| intron-5UTR | ENST00000273308 | ENST00000551720 | CNPY2 | chr12 | 56705195 | + | CNPY2 | chr12 | 56705155 | - |
| intron-3CDS | ENST00000551720 | ENST00000273308 | CNPY2 | chr12 | 56705195 | + | CNPY2 | chr12 | 56705155 | - |
| intron-5UTR | ENST00000551720 | ENST00000551720 | CNPY2 | chr12 | 56705195 | + | CNPY2 | chr12 | 56705155 | - |
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FusionProtFeatures for CNPY2_CNPY2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CNPY2 | CNPY2 |