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Fusion gene ID: 5983 |
FusionGeneSummary for CCNC_FAM201A |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CCNC_FAM201A | Fusion gene ID: 5983 | Hgene | Tgene | Gene symbol | CCNC | FAM201A | Gene ID | 892 | 158228 |
| Gene name | cyclin C | family with sequence similarity 201 member A | |
| Synonyms | CycC|SRB11|hSRB11 | C9orf122 | |
| Cytomap | 6q16.2 | 9p13.1 | |
| Type of gene | protein-coding | ncRNA | |
| Description | cyclin-CSRB11 homolog | - | |
| Modification date | 20180525 | 20180329 | |
| UniProtAcc | P24863 | ||
| Ensembl transtripts involved in fusion gene | ENST00000520429, ENST00000369220, ENST00000520371, ENST00000523799, ENST00000523985, ENST00000518714, ENST00000521017, ENST00000482541, | ENST00000471864, ENST00000484285, ENST00000377680, | |
| Fusion gene scores | * DoF score | 3 X 1 X 2=6 | 3 X 1 X 3=9 |
| # samples | 3 | 3 | |
| ** MAII score | log2(3/6*10)=2.32192809488736 | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: CCNC [Title/Abstract] AND FAM201A [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | CHOL | TCGA-YR-A95A-01A | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-3UTR | ENST00000520429 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000520429 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000520429 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000369220 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000369220 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000369220 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000520371 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000520371 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000520371 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| intron-3UTR | ENST00000523799 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| intron-3UTR | ENST00000523799 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| intron-3UTR | ENST00000523799 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5UTR-3UTR | ENST00000523985 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5UTR-3UTR | ENST00000523985 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5UTR-3UTR | ENST00000523985 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000518714 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000518714 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000518714 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5UTR-3UTR | ENST00000521017 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5UTR-3UTR | ENST00000521017 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5UTR-3UTR | ENST00000521017 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000482541 | ENST00000471864 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000482541 | ENST00000484285 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
| 5CDS-3UTR | ENST00000482541 | ENST00000377680 | CCNC | chr6 | 100016372 | - | FAM201A | chr9 | 38621829 | + |
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FusionProtFeatures for CCNC_FAM201A |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CCNC | FAM201A |