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Fusion gene ID: 5959

FusionGeneSummary for CCHCR1_CDA

Fusion gene summary

Fusion gene information	Fusion gene name: CCHCR1_CDA
	Fusion gene ID: 5959
		Hgene	Tgene
	Gene symbol	CCHCR1	CDA
	Gene ID	54535	978
	Gene name	coiled-coil alpha-helical rod protein 1	cytidine deaminase
	Synonyms	C6orf18\|HCR\|SBP\|pg8	CDD
	Cytomap	6p21.33	1p36.12
	Type of gene	protein-coding	protein-coding
	Description	coiled-coil alpha-helical rod protein 1HCR (a-helix coiled-coil rod homologue)StAR-binding proteinalpha-helical coiled-coil rod proteinputative gene 8 protein	cytidine deaminasecytidine aminohydrolasecytosine nucleoside deaminasesmall cytidine deaminase
	Modification date	20180523	20180523
	UniProtAcc	Q8TD31	P32320
	Ensembl transtripts involved in fusion gene	ENST00000396268, ENST00000376266, ENST00000396263, ENST00000451521, ENST00000480060, ENST00000416163, ENST00000400351, ENST00000425620, ENST00000466904, ENST00000400352, ENST00000414614, ENST00000383341, ENST00000474554, ENST00000419528, ENST00000428677, ENST00000433804, ENST00000481855, ENST00000400412, ENST00000400406, ENST00000383527, ENST00000470755, ENST00000447252, ENST00000452333, ENST00000416392, ENST00000467461,	ENST00000375071, ENST00000461985,
Fusion gene scores	* DoF score	1 X 1 X 1=1	2 X 2 X 1=4
	# samples	1	2
	** MAII score	log2(1/1*10)=3.32192809488736	log2(2/4*10)=2.32192809488736
Context	PubMed: CCHCR1 [Title/Abstract] AND CDA [Title/Abstract] AND fusion [Title/Abstract]
Functional or gene categories assigned by FusionGDB annotation

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Tgene	CDA	GO:0009972	cytidine deamination	9596658
Tgene	CDA	GO:0030308	negative regulation of cell growth	9596658
Tgene	CDA	GO:0045980	negative regulation of nucleotide metabolic process	9596658
Tgene	CDA	GO:0051289	protein homotetramerization	9596658\|15689149

Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Data type	Source	Cancer type	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+

* LD: Li Ding group's fusion gene list
RV: Roel Verhaak group's fusion gene list
ChiTaRs fusion database

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
intron-intron	ENST00000396268	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000396268	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000376266	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000376266	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000396263	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000396263	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000451521	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000451521	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000480060	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000480060	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416163	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416163	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400351	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400351	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000425620	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000425620	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000466904	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000466904	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400352	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400352	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000414614	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000414614	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383341	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383341	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000474554	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000474554	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000419528	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000419528	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000428677	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000428677	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000433804	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000433804	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000481855	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000481855	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400412	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400412	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400406	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400406	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383527	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383527	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000470755	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000470755	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000447252	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000447252	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000452333	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000452333	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416392	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416392	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000467461	ENST00000375071	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000467461	ENST00000461985	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+

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FusionProtFeatures for CCHCR1_CDA

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
CCHCR1 Q8TD31	CDA P32320

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Fusion gene ID: 5959

FusionGeneSummary for CCHCR1_CDA

FusionProtFeatures for CCHCR1_CDA