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Fusion gene ID: 4867 |
FusionGeneSummary for C1orf198_RGPD5 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: C1orf198_RGPD5 | Fusion gene ID: 4867 | Hgene | Tgene | Gene symbol | C1orf198 | RGPD5 | Gene ID | 84886 | 84220 |
| Gene name | chromosome 1 open reading frame 198 | RANBP2-like and GRIP domain containing 5 | |
| Synonyms | - | BS-63|BS63|HEL161|RGP5 | |
| Cytomap | 1q42.2 | 2q13 | |
| Type of gene | protein-coding | protein-coding | |
| Description | uncharacterized protein C1orf198 | RANBP2-like and GRIP domain-containing protein 5/6RANBP2-like and GRIP domain-containing protein 5epididymis luminal protein 161ran-binding protein 2-like 1ran-binding protein 2-like 1/2ranBP2-like 1ranBP2-like 1/2ranBP2L1sperm membrane protein BS | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q9H425 | Q99666 | |
| Ensembl transtripts involved in fusion gene | ENST00000366663, ENST00000470540, ENST00000427697, ENST00000523410, | ENST00000393283, ENST00000272454, ENST00000016946, ENST00000495582, | |
| Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 1 X 1 X 1=1 |
| # samples | 3 | 1 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: C1orf198 [Title/Abstract] AND RGPD5 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BP372051 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000366663 | ENST00000393283 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000366663 | ENST00000272454 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000366663 | ENST00000016946 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000366663 | ENST00000495582 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000470540 | ENST00000393283 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000470540 | ENST00000272454 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000470540 | ENST00000016946 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000470540 | ENST00000495582 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000427697 | ENST00000393283 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000427697 | ENST00000272454 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000427697 | ENST00000016946 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000427697 | ENST00000495582 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000523410 | ENST00000393283 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000523410 | ENST00000272454 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000523410 | ENST00000016946 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
| intron-intron | ENST00000523410 | ENST00000495582 | C1orf198 | chr1 | 230972873 | - | RGPD5 | chr2 | 113128412 | - |
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FusionProtFeatures for C1orf198_RGPD5 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| C1orf198 | RGPD5 |