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Fusion gene ID: 38720 |
FusionGeneSummary for TMF1_TMF1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TMF1_TMF1 | Fusion gene ID: 38720 | Hgene | Tgene | Gene symbol | TMF1 | TMF1 | Gene ID | 7110 | 7110 |
| Gene name | TATA element modulatory factor 1 | TATA element modulatory factor 1 | |
| Synonyms | ARA160|TMF | ARA160|TMF | |
| Cytomap | 3p14.1 | 3p14.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | TATA element modulatory factorandrogen receptor coactivator 160 kDa proteinandrogen receptor-associated protein of 160 kDa | TATA element modulatory factorandrogen receptor coactivator 160 kDa proteinandrogen receptor-associated protein of 160 kDa | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | P82094 | P82094 | |
| Ensembl transtripts involved in fusion gene | ENST00000398559, ENST00000543976, ENST00000489370, | ENST00000398559, ENST00000543976, ENST00000489370, | |
| Fusion gene scores | * DoF score | 2 X 4 X 2=16 | 3 X 4 X 2=24 |
| # samples | 3 | 4 | |
| ** MAII score | log2(3/16*10)=0.906890595608518 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: TMF1 [Title/Abstract] AND TMF1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BM828170 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - | ||
| ChiTaRS3.1 | BG164911 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000398559 | ENST00000398559 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-3CDS | ENST00000398559 | ENST00000543976 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-intron | ENST00000398559 | ENST00000489370 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-3CDS | ENST00000543976 | ENST00000398559 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-3CDS | ENST00000543976 | ENST00000543976 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-intron | ENST00000543976 | ENST00000489370 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-3CDS | ENST00000489370 | ENST00000398559 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-3CDS | ENST00000489370 | ENST00000543976 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-intron | ENST00000489370 | ENST00000489370 | TMF1 | chr3 | 69079134 | - | TMF1 | chr3 | 69101208 | - |
| intron-3UTR | ENST00000398559 | ENST00000398559 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-3UTR | ENST00000398559 | ENST00000543976 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-intron | ENST00000398559 | ENST00000489370 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-3UTR | ENST00000543976 | ENST00000398559 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-3UTR | ENST00000543976 | ENST00000543976 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-intron | ENST00000543976 | ENST00000489370 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-3UTR | ENST00000489370 | ENST00000398559 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-3UTR | ENST00000489370 | ENST00000543976 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
| intron-intron | ENST00000489370 | ENST00000489370 | TMF1 | chr3 | 69072075 | + | TMF1 | chr3 | 69072036 | - |
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FusionProtFeatures for TMF1_TMF1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TMF1 | TMF1 |