|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 38463 |
FusionGeneSummary for TMEM164_NDUFV3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TMEM164_NDUFV3 | Fusion gene ID: 38463 | Hgene | Tgene | Gene symbol | TMEM164 | NDUFV3 | Gene ID | 84187 | 4731 |
| Gene name | transmembrane protein 164 | NADH:ubiquinone oxidoreductase subunit V3 | |
| Synonyms | bB360B22.3 | CI-10k|CI-9KD | |
| Cytomap | Xq23 | 21q22.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | transmembrane protein 164RP13-360B22.2 | NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialNADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDaNADH-ubiquinone oxidoreductase 9 kD subunitNADH-ubiquinone oxidoreductase 9 kDa subunitNADH-ubiquinone oxidoreductase flavoprotein 3, 10k | |
| Modification date | 20180519 | 20180522 | |
| UniProtAcc | Q5U3C3 | P56181 | |
| Ensembl transtripts involved in fusion gene | ENST00000372072, ENST00000372073, ENST00000372068, ENST00000288381, ENST00000464177, | ENST00000460259, ENST00000354250, ENST00000340344, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 2 X 1 X 2=4 |
| # samples | 2 | 2 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(2/4*10)=2.32192809488736 | |
| Context | PubMed: TMEM164 [Title/Abstract] AND NDUFV3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | KIRC | TCGA-CJ-5681-01A | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3UTR | ENST00000372072 | ENST00000460259 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372072 | ENST00000354250 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372072 | ENST00000340344 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372073 | ENST00000460259 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372073 | ENST00000354250 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372073 | ENST00000340344 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372068 | ENST00000460259 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372068 | ENST00000354250 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000372068 | ENST00000340344 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000288381 | ENST00000460259 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000288381 | ENST00000354250 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000288381 | ENST00000340344 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000464177 | ENST00000460259 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000464177 | ENST00000354250 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
| 3UTR-3UTR | ENST00000464177 | ENST00000340344 | TMEM164 | chrX | 109416681 | + | NDUFV3 | chr21 | 44328974 | + |
Top |
FusionProtFeatures for TMEM164_NDUFV3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TMEM164 | NDUFV3 |