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Fusion gene ID: 37935 |
FusionGeneSummary for TGOLN2_PSME2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TGOLN2_PSME2 | Fusion gene ID: 37935 | Hgene | Tgene | Gene symbol | TGOLN2 | PSME2 | Gene ID | 10618 | 5721 |
| Gene name | trans-golgi network protein 2 | proteasome activator subunit 2 | |
| Synonyms | TGN38|TGN46|TGN48|TGN51|TTGN2 | PA28B|PA28beta|REGbeta | |
| Cytomap | 2p11.2 | 14q12 | |
| Type of gene | protein-coding | protein-coding | |
| Description | trans-Golgi network integral membrane protein 2TGN38 homologtrans-Golgi network protein (46, 48, 51kD isoforms)trans-Golgi network protein TGN51 | proteasome activator complex subunit 211S regulator complex beta subunit11S regulator complex subunit betaMCP activator, 31-kD subunitREG-betaactivator of multicatalytic protease subunit 2cell migration-inducing protein 22proteasome (prosome, macro | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | O43493 | Q9UL46 | |
| Ensembl transtripts involved in fusion gene | ENST00000282120, ENST00000377386, ENST00000398263, ENST00000409232, ENST00000409015, ENST00000444342, | ENST00000560410, ENST00000216802, ENST00000471700, | |
| Fusion gene scores | * DoF score | 7 X 7 X 3=147 | 2 X 2 X 2=8 |
| # samples | 7 | 2 | |
| ** MAII score | log2(7/147*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: TGOLN2 [Title/Abstract] AND PSME2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BG999584 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000282120 | ENST00000560410 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000282120 | ENST00000216802 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000282120 | ENST00000471700 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000377386 | ENST00000560410 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000377386 | ENST00000216802 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000377386 | ENST00000471700 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000398263 | ENST00000560410 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000398263 | ENST00000216802 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000398263 | ENST00000471700 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000409232 | ENST00000560410 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000409232 | ENST00000216802 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000409232 | ENST00000471700 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000409015 | ENST00000560410 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000409015 | ENST00000216802 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000409015 | ENST00000471700 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000444342 | ENST00000560410 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000444342 | ENST00000216802 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
| intron-intron | ENST00000444342 | ENST00000471700 | TGOLN2 | chr2 | 85548383 | + | PSME2 | chr14 | 24613539 | - |
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FusionProtFeatures for TGOLN2_PSME2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TGOLN2 | PSME2 |