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Fusion gene ID: 36862 |
FusionGeneSummary for SYBU_RBM23 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SYBU_RBM23 | Fusion gene ID: 36862 | Hgene | Tgene | Gene symbol | SYBU | RBM23 | Gene ID | 55638 | 55147 |
| Gene name | syntabulin | RNA binding motif protein 23 | |
| Synonyms | GOLSYN|OCSYN|SNPHL | CAPERbeta|PP239|RNPC4 | |
| Cytomap | 8q23.2 | 14q11.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | syntabulinGOLSYN A proteinGOLSYN B proteinGOLSYN C proteinGolgi-localized proteingolgi-localized syntaphilin-related proteinimplicated in syntaxin trafficking in neuronsmicrotubule-associated proteinsyntabulin (syntaxin-interacting)syntaxin-1-bin | probable RNA-binding protein 23RNA-binding region (RNP1, RRM) containing 4RNA-binding region-containing protein 4coactivator of activating protein-1 and estrogen recep- tors betasplicing factor SF2 | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q9NX95 | Q86U06 | |
| Ensembl transtripts involved in fusion gene | ENST00000533895, ENST00000424158, ENST00000532779, ENST00000399066, ENST00000446070, ENST00000528331, ENST00000276646, ENST00000528647, ENST00000440310, ENST00000433638, ENST00000408908, ENST00000408889, ENST00000422135, ENST00000419099, ENST00000533065, ENST00000533171, ENST00000529175, ENST00000529690, ENST00000527707, | ENST00000555209, ENST00000359890, ENST00000399922, ENST00000346528, ENST00000542016, ENST00000556984, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 2 X 2 X 2=8 |
| # samples | 2 | 2 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: SYBU [Title/Abstract] AND RBM23 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BF762412 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000533895 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533895 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533895 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533895 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533895 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000533895 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000424158 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000424158 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000424158 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000424158 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000424158 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000424158 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000532779 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000532779 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000532779 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000532779 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000532779 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000532779 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000399066 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000399066 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000399066 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000399066 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000399066 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000399066 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000446070 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000446070 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000446070 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000446070 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000446070 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000446070 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528331 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528331 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528331 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528331 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528331 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000528331 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000276646 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000276646 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000276646 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000276646 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000276646 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000276646 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528647 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528647 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528647 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528647 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000528647 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000528647 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000440310 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000440310 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000440310 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000440310 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000440310 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000440310 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000433638 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000433638 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000433638 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000433638 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000433638 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000433638 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408908 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408908 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408908 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408908 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408908 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000408908 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408889 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408889 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408889 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408889 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000408889 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000408889 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000422135 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000422135 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000422135 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000422135 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000422135 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000422135 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000419099 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000419099 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000419099 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000419099 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000419099 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000419099 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533065 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533065 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533065 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533065 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533065 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000533065 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533171 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533171 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533171 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533171 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000533171 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000533171 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529175 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529175 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529175 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529175 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529175 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000529175 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529690 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529690 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529690 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529690 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000529690 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000529690 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000527707 | ENST00000555209 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000527707 | ENST00000359890 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000527707 | ENST00000399922 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000527707 | ENST00000346528 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-3CDS | ENST00000527707 | ENST00000542016 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
| intron-intron | ENST00000527707 | ENST00000556984 | SYBU | chr8 | 110653262 | - | RBM23 | chr14 | 23371500 | - |
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FusionProtFeatures for SYBU_RBM23 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SYBU | RBM23 |