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Fusion gene ID: 35101 |
FusionGeneSummary for SNHG12_SRRT |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SNHG12_SRRT | Fusion gene ID: 35101 | Hgene | Tgene | Gene symbol | SNHG12 | SRRT | Gene ID | 85028 | 51593 |
| Gene name | small nucleolar RNA host gene 12 | serrate, RNA effector molecule | |
| Synonyms | ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123 | ARS2|ASR2|serrate | |
| Cytomap | 1p35.3 | 7q22.1 | |
| Type of gene | ncRNA | protein-coding | |
| Description | long intergenic non-protein coding RNA 100small nucleolar RNA host gene 12 (non-protein coding) | serrate RNA effector molecule homologarsenate resistance protein 2arsenate resistance protein ARS2arsenite resistance proteinarsenite-resistance protein 2 | |
| Modification date | 20180520 | 20180519 | |
| UniProtAcc | Q9BXP5 | ||
| Ensembl transtripts involved in fusion gene | ENST00000475441, ENST00000531126, ENST00000488745, ENST00000483436, ENST00000384581, ENST00000384584, ENST00000384342, | ENST00000457580, ENST00000388793, ENST00000432932, ENST00000347433, | |
| Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 5 X 5 X 2=50 |
| # samples | 3 | 5 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/50*10)=0 | |
| Context | PubMed: SNHG12 [Title/Abstract] AND SRRT [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | R73443 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000475441 | ENST00000457580 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000475441 | ENST00000388793 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000475441 | ENST00000432932 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000475441 | ENST00000347433 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000531126 | ENST00000457580 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000531126 | ENST00000388793 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000531126 | ENST00000432932 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000531126 | ENST00000347433 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000488745 | ENST00000457580 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000488745 | ENST00000388793 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000488745 | ENST00000432932 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000488745 | ENST00000347433 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000483436 | ENST00000457580 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000483436 | ENST00000388793 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000483436 | ENST00000432932 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000483436 | ENST00000347433 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384581 | ENST00000457580 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384581 | ENST00000388793 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384581 | ENST00000432932 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384581 | ENST00000347433 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384584 | ENST00000457580 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384584 | ENST00000388793 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384584 | ENST00000432932 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384584 | ENST00000347433 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384342 | ENST00000457580 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384342 | ENST00000388793 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384342 | ENST00000432932 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
| intron-3CDS | ENST00000384342 | ENST00000347433 | SNHG12 | chr1 | 28908310 | - | SRRT | chr7 | 100485690 | + |
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FusionProtFeatures for SNHG12_SRRT |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SNHG12 | SRRT |