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Fusion gene ID: 33976 |
FusionGeneSummary for SKIV2L2_PCDHGB4 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SKIV2L2_PCDHGB4 | Fusion gene ID: 33976 | Hgene | Tgene | Gene symbol | SKIV2L2 | PCDHGB4 | Gene ID | 8641 |
| Gene name | protocadherin gamma subfamily B, 4 | ||
| Synonyms | CDH20|FIB2|PCDH-GAMMA-B4 | ||
| Cytomap | 5q31.3 | ||
| Type of gene | protein-coding | ||
| Description | protocadherin gamma-B4cadherin 20fibroblast cadherin FIB2fibroblast cadherin-2 | ||
| Modification date | 20180523 | ||
| UniProtAcc | Q9UN71 | ||
| Ensembl transtripts involved in fusion gene | ENST00000230640, ENST00000545714, ENST00000504388, | ENST00000519479, | |
| Fusion gene scores | * DoF score | 22 X 8 X 8=1408 | 1 X 1 X 1=1 |
| # samples | 12 | 1 | |
| ** MAII score | log2(12/1408*10)=-3.55254102302878 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: SKIV2L2 [Title/Abstract] AND PCDHGB4 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |