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Fusion gene ID: 32253 |
FusionGeneSummary for RRN3P2_BANP |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RRN3P2_BANP | Fusion gene ID: 32253 | Hgene | Tgene | Gene symbol | RRN3P2 | BANP | Gene ID | 653390 | 54971 |
| Gene name | RRN3 homolog, RNA polymerase I transcription factor pseudogene 2 | BTG3 associated nuclear protein | |
| Synonyms | - | BEND1|SMAR1|SMARBP1 | |
| Cytomap | 16p11.2 | 16q24.2 | |
| Type of gene | pseudo | protein-coding | |
| Description | RNA polymerase I transcription factor homolog pseudogene 2RRN3 RNA polymerase I transcription factor homolog pseudogeneRRN3-like protein 1 | protein BANPBEN domain-containing protein 1scaffold/matrix-associated region-1-binding protein | |
| Modification date | 20180329 | 20180520 | |
| UniProtAcc | Q8N9N5 | ||
| Ensembl transtripts involved in fusion gene | ENST00000564580, | ENST00000286122, ENST00000355163, ENST00000479780, ENST00000393208, ENST00000355022, ENST00000538234, ENST00000393207, ENST00000481948, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 2 X 2 X 2=8 |
| # samples | 1 | 2 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: RRN3P2 [Title/Abstract] AND BANP [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | LAML | TCGA-AB-2868-03A | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3CDS | ENST00000564580 | ENST00000286122 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000355163 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000479780 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000393208 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000355022 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000538234 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000393207 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-intron | ENST00000564580 | ENST00000481948 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
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FusionProtFeatures for RRN3P2_BANP |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RRN3P2 | BANP |