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Fusion gene ID: 30368 |
FusionGeneSummary for RAN_CD74 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RAN_CD74 | Fusion gene ID: 30368 | Hgene | Tgene | Gene symbol | RAN | CD74 | Gene ID | 5901 | 972 |
| Gene name | RAN, member RAS oncogene family | CD74 molecule | |
| Synonyms | ARA24|Gsp1|TC4 | DHLAG|HLADG|II|Ia-GAMMA | |
| Cytomap | 12q24.33 | 5q33.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | GTP-binding nuclear protein RanGTPase RanOK/SW-cl.81RanGTPaseandrogen receptor-associated protein 24guanosine triphosphatase Ranmember RAS oncogene familyras-like protein TC4ras-related nuclear protein | HLA class II histocompatibility antigen gamma chainCD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)CD74 molecule, major histocompatibility complex, class II invariant chainHLA-DR antigens-associated | |
| Modification date | 20180526 | 20180522 | |
| UniProtAcc | P62826 | P04233 | |
| Ensembl transtripts involved in fusion gene | ENST00000543796, ENST00000541630, ENST00000392369, ENST00000254675, ENST00000392367, | ENST00000377795, ENST00000353334, ENST00000524315, ENST00000009530, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 16 X 15 X 5=1200 |
| # samples | 1 | 27 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(27/1200*10)=-2.15200309344505 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: RAN [Title/Abstract] AND CD74 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | RAN | GO:0006606 | protein import into nucleus | 9822603 |
| Hgene | RAN | GO:0006611 | protein export from nucleus | 16449645 |
| Hgene | RAN | GO:0032092 | positive regulation of protein binding | 16449645 |
| Hgene | RAN | GO:0046039 | GTP metabolic process | 26272610 |
| Tgene | CD74 | GO:0001516 | prostaglandin biosynthetic process | 12782713 |
| Tgene | CD74 | GO:0001934 | positive regulation of protein phosphorylation | 24942581 |
| Tgene | CD74 | GO:0002792 | negative regulation of peptide secretion | 19849849 |
| Tgene | CD74 | GO:0007165 | signal transduction | 12782713 |
| Tgene | CD74 | GO:0008283 | cell proliferation | 12782713 |
| Tgene | CD74 | GO:0033674 | positive regulation of kinase activity | 24942581 |
| Tgene | CD74 | GO:0043066 | negative regulation of apoptotic process | 12782713 |
| Tgene | CD74 | GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | 24942581 |
| Tgene | CD74 | GO:0043410 | positive regulation of MAPK cascade | 24942581 |
| Tgene | CD74 | GO:0043518 | negative regulation of DNA damage response, signal transduction by p53 class mediator | 17045821 |
| Tgene | CD74 | GO:0045657 | positive regulation of monocyte differentiation | 24942581 |
| Tgene | CD74 | GO:0045893 | positive regulation of transcription, DNA-templated | 24942581 |
| Tgene | CD74 | GO:0046598 | positive regulation of viral entry into host cell | 24942581 |
| Tgene | CD74 | GO:0050731 | positive regulation of peptidyl-tyrosine phosphorylation | 17045821 |
| Tgene | CD74 | GO:0051290 | protein heterotetramerization | 24942581 |
| Tgene | CD74 | GO:0070374 | positive regulation of ERK1 and ERK2 cascade | 17045821|24942581 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BX456619 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3UTR | ENST00000543796 | ENST00000377795 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000543796 | ENST00000353334 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000543796 | ENST00000524315 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-intron | ENST00000543796 | ENST00000009530 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000541630 | ENST00000377795 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000541630 | ENST00000353334 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000541630 | ENST00000524315 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-intron | ENST00000541630 | ENST00000009530 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000392369 | ENST00000377795 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000392369 | ENST00000353334 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000392369 | ENST00000524315 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-intron | ENST00000392369 | ENST00000009530 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000254675 | ENST00000377795 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000254675 | ENST00000353334 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-3UTR | ENST00000254675 | ENST00000524315 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| 3UTR-intron | ENST00000254675 | ENST00000009530 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| intron-3UTR | ENST00000392367 | ENST00000377795 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| intron-3UTR | ENST00000392367 | ENST00000353334 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| intron-3UTR | ENST00000392367 | ENST00000524315 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
| intron-intron | ENST00000392367 | ENST00000009530 | RAN | chr12 | 131360564 | - | CD74 | chr5 | 149781555 | - |
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FusionProtFeatures for RAN_CD74 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RAN | CD74 |