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Fusion gene ID: 27834 |
FusionGeneSummary for PNMA1_PNMA1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PNMA1_PNMA1 | Fusion gene ID: 27834 | Hgene | Tgene | Gene symbol | PNMA1 | PNMA1 | Gene ID | 9240 | 9240 |
| Gene name | PNMA family member 1 | PNMA family member 1 | |
| Synonyms | MA1 | MA1 | |
| Cytomap | 14q24.3 | 14q24.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | paraneoplastic antigen Ma137 kDa neuronal proteinneuron- and testis-specific protein 1paraneoplastic Ma antigen 1paraneoplastic neuronal antigen MA1 | paraneoplastic antigen Ma137 kDa neuronal proteinneuron- and testis-specific protein 1paraneoplastic Ma antigen 1paraneoplastic neuronal antigen MA1 | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q8ND90 | Q8ND90 | |
| Ensembl transtripts involved in fusion gene | ENST00000316836, | ENST00000316836, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
| # samples | 1 | 1 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: PNMA1 [Title/Abstract] AND PNMA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | AF037364 | PNMA1 | chr14 | 74181087 | + | PNMA1 | chr14 | 74180950 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-5UTR | ENST00000316836 | ENST00000316836 | PNMA1 | chr14 | 74181087 | + | PNMA1 | chr14 | 74180950 | - |
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FusionProtFeatures for PNMA1_PNMA1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PNMA1 | PNMA1 |