|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 23971 |
FusionGeneSummary for NEDD4_RFX7 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: NEDD4_RFX7 | Fusion gene ID: 23971 | Hgene | Tgene | Gene symbol | NEDD4 | RFX7 | Gene ID | 4734 | 64864 |
| Gene name | neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase | regulatory factor X7 | |
| Synonyms | NEDD4-1|RPF1 | RFXDC2 | |
| Cytomap | 15q21.3 | 15q21.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | E3 ubiquitin-protein ligase NEDD4HECT-type E3 ubiquitin transferase NEDD4cell proliferation-inducing gene 53 proteinreceptor-potentiating factor 1 | DNA-binding protein RFX7regulatory factor X domain containing 2regulatory factor X domain-containing protein 2regulatory factor X, 7 | |
| Modification date | 20180527 | 20180523 | |
| UniProtAcc | P46934 | Q2KHR2 | |
| Ensembl transtripts involved in fusion gene | ENST00000435532, ENST00000338963, ENST00000508342, ENST00000506154, ENST00000508075, | ENST00000422057, ENST00000317318, ENST00000423270, ENST00000559447, | |
| Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 4 X 4 X 3=48 |
| # samples | 4 | 5 | |
| ** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: NEDD4 [Title/Abstract] AND RFX7 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Transcription factor involved fusion gene, inframe and retained DNA-binding domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | NEDD4 | GO:0006511 | ubiquitin-dependent protein catabolic process | 20086093 |
| Hgene | NEDD4 | GO:0006622 | protein targeting to lysosome | 17116753 |
| Hgene | NEDD4 | GO:0007041 | lysosomal transport | 18544533 |
| Hgene | NEDD4 | GO:0010766 | negative regulation of sodium ion transport | 10642508 |
| Hgene | NEDD4 | GO:0016567 | protein ubiquitination | 17996703|18305167|25631046|26280536 |
| Hgene | NEDD4 | GO:0031623 | receptor internalization | 18544533 |
| Hgene | NEDD4 | GO:0032801 | receptor catabolic process | 18544533 |
| Hgene | NEDD4 | GO:0034765 | regulation of ion transmembrane transport | 17289006 |
| Hgene | NEDD4 | GO:0042391 | regulation of membrane potential | 17289006 |
| Hgene | NEDD4 | GO:0042921 | glucocorticoid receptor signaling pathway | 8649367 |
| Hgene | NEDD4 | GO:0045732 | positive regulation of protein catabolic process | 14973438 |
| Hgene | NEDD4 | GO:0046824 | positive regulation of nucleocytoplasmic transport | 17218261 |
| Hgene | NEDD4 | GO:0050847 | progesterone receptor signaling pathway | 8649367 |
| Hgene | NEDD4 | GO:1901016 | regulation of potassium ion transmembrane transporter activity | 17289006 |
| Hgene | NEDD4 | GO:2000650 | negative regulation of sodium ion transmembrane transporter activity | 10642508 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-AN-A0FW-01A | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000435532 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| 5CDS-intron | ENST00000435532 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| 5CDS-intron | ENST00000435532 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| 5CDS-intron | ENST00000435532 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-3CDS | ENST00000338963 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000338963 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000338963 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000338963 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-3CDS | ENST00000508342 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000508342 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000508342 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000508342 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-3CDS | ENST00000506154 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000506154 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000506154 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000506154 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-3CDS | ENST00000508075 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000508075 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000508075 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
| intron-intron | ENST00000508075 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
Top |
FusionProtFeatures for NEDD4_RFX7 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| NEDD4 | RFX7 |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000317318 | - | 0 | 10 | 538_541 | 0 | 1374 | Compositional bias | Note=Poly-Ser |
| Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000423270 | - | 0 | 9 | 538_541 | 0 | 1461 | Compositional bias | Note=Poly-Ser |
| Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000317318 | - | 0 | 10 | 11_86 | 0 | 1374 | DNA binding | RFX-type winged-helix |
| Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000423270 | - | 0 | 9 | 11_86 | 0 | 1461 | DNA binding | RFX-type winged-helix |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 68_215 | -100 | 1248 | Compositional bias | Note=Ser-rich |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 68_215 | 39 | 901 | Compositional bias | Note=Ser-rich |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 68_215 | -93 | 1304 | Compositional bias | Note=Ser-rich |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 68_215 | -100 | 1320 | Compositional bias | Note=Ser-rich |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 610_643 | -100 | 1248 | Domain | WW 1 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 767_800 | -100 | 1248 | Domain | WW 2 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 840_873 | -100 | 1248 | Domain | WW 3 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 892_925 | -100 | 1248 | Domain | WW 4 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 984_1318 | -100 | 1248 | Domain | HECT |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 610_643 | 39 | 901 | Domain | WW 1 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 767_800 | 39 | 901 | Domain | WW 2 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 840_873 | 39 | 901 | Domain | WW 3 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 892_925 | 39 | 901 | Domain | WW 4 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 984_1318 | 39 | 901 | Domain | HECT |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 610_643 | -93 | 1304 | Domain | WW 1 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 767_800 | -93 | 1304 | Domain | WW 2 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 840_873 | -93 | 1304 | Domain | WW 3 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 892_925 | -93 | 1304 | Domain | WW 4 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 984_1318 | -93 | 1304 | Domain | HECT |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 610_643 | -100 | 1320 | Domain | WW 1 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 767_800 | -100 | 1320 | Domain | WW 2 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 840_873 | -100 | 1320 | Domain | WW 3 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 892_925 | -100 | 1320 | Domain | WW 4 |
| Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 984_1318 | -100 | 1320 | Domain | HECT |
Top |
FusionGeneSequence for NEDD4_RFX7 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_NEDD4_ENST00000435532_chr15_56258671_-_RFX7_ENST00000422057_chr15_56379707_-_53aa |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_NEDD4_ENST00000435532_chr15_56258671_-_RFX7_ENST00000422057_chr15_56379707_-_161nt ATGGCAACTTGCGCGGTGGAGGTGTTCGGGCTCCTGGAGGACGAGGAAAATTCACGAATTGTGAGAGTAAGAGTTATAGCCGGAATAGGC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_NEDD4_ENST00000435532_chr15_56258671_-_RFX7_ENST00000422057_chr15_56379707_-_352nt GGCCTTTTCCCGCCGCGCTGCCGGGTGCCGCTAGTGCCCGCTCGCCGCGGGAGGCGCTGCTGTCGCTGAGGGAGCGCCTCCTCCTCTTCC TCCAACTCTTCCCCGCCTCCTCCCGCTTCTCCTCCTCCTCCTCCACAGTTGCCTGCCCTGGGCGGGGGCGAGCGCGTCCGGTTTGCTGGA AGCGTTCGGAAATGGCAACTTGCGCGGTGGAGGTGTTCGGGCTCCTGGAGGACGAGGAAAATTCACGAATTGTGAGAGTAAGAGTTATAG |
Top |
FusionGenePPI for NEDD4_RFX7 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| NEDD4 | UBE2D2, CBLB, PMEPA1, NDFIP2, SGK1, IGF1R, UBE2D3, UBE2E1, UBE2L3, SCNN1A, SCNN1B, SCNN1G, HGS, N4BP3, CDC25C, SCAMP3, AP1G2, ARRB2, ARRB1, TTYH3, TTYH2, PTEN, NEDD4, ISG15, POLR2A, LAPTM5, GGA3, SLC6A3, PDCD6IP, GABARAP, GABARAPL1, GABARAPL2, MLANA, TP73, SMAD2, SMAD3, SMAD6, SMAD7, SMURF2, SKIL, SCN5A, NTRK1, CPSF6, UBAP2L, GRB10, GJA1, RAPGEF2, GRIA1, SLC12A3, FGFR1, DCUN1D1, SLC38A3, SCN8A, EPS15, SLC11A2, TNK2, TNIK, RAP2A, MTMR4, RNF11, ARRDC3, ADRB2, SLC9A1, RASGEF1A, UBOX5, RANBP10, CAMK1D, ABL2, MAPKAPK3, YY1, WBP2, RTF1, EGFR, ANKRD13D, TRIM52, TRIM44, BAIAP2, PLK2, CUEDC1, FLT1, RAD51AP1, SAMSN1, LUC7L2, CLIC2, CALCOCO1, FYN, MAP3K3, ABL1, CDK5, STK31, AKT1, MARK2, ERMN, SGK2, PRKX, MAP3K5, MAP3K2, TOM1L2, RPS6KB1, C11orf63, TOM1, MARK4, RPS6KA3, PDGFRB, SPANXN3, GBA, AKT3, DDX54, FGFR2, GRK7, SFTPC, CFTR, SNCA, PSMD4, SPRY2, SPRY1, UBC, ERBB4, ERG, KCNQ1, ARRDC1, TEAD2, SMAD1, AMPD2, BMPR1A, TSTA3, FGF12, FKBP3, KCNAB1, KCNAB2, MAP4K5, MOB3A, NHP2, NSRP1, RNF7, EBAG9, MRPL19, RASL11B, SAAL1, KIAA1598, SIVA1, SYT1, TCP11L1, TBC1D7, TCEANC, WIBG, YES1, ASPSCR1, HMCES, FGF21, RBCK1, IRS1, KIFC3, SP140L, PARP16, PRR16, RPAP3, SLC23A2, SEPT9, TAF1B, PRRG1, UBE2M, SRMS, CDK5R1, CAMK4, FES, PLK1, TBK1, STK24, STK25, STK26, RPS6KA4, RAF1, GRK4, WEE1, CLK3, EPHA5, STK4, AURKC, SYK, DYRK4, PKN2, PRKG2, FLT4, CAMKK2, SULF1, RFT1, MAP2, ANXA9, RAC1, DVL1, AMOT, SLC5A7, TSG101, JUN, KIF26B, LAPTM4A, LAPTM4B, RPSA, IL2RB, IL2RG, LITAF, BECN1, ANXA13, TRPV6, NFE2, LRRK1, MDM2, BRCA2, UBE2D1, DMD, MGRN1, FBXL15, SMAD5, PPARG, GRIN2D, GRIN2A, URI1, POLR2B, POLR2C, POLR2E, POLR3A, RUVBL1, SMARCC1, ARID1A, THRAP3, CPSF1, NUDT21, DDX3X, DHX30, RPAP2, HNRNPK, HNRNPL, HNRNPU, HNRNPUL1, PRPF8, SRSF7, EPRS, RPS3A, DIAPH1, AMOTL1, RAPGEF6, POLR2M, CAD, CUL1, BTRC, FBXL18, RBX1, SKP1, CSNK1D, ERBB3, CCNH, GUCD1, YOD1, SMO, PTCH1, CUL5, SRC, MYCN, LATS1, FAM189B, TMEM51, TMEM171, FAM189A2, WBP1, TMEM255A, TMEM92, TMEM52B, LDLRAD4, ABCB1, IMPDH2, PAX7, SAV1, LATS2, PDLIM7, GLIS3, HSF1, ABCG1, IRS2, IFITM3, NDFIP1, THOC1, SUV420H2, DDIT4, PTK2B, MAP1LC3B, ILDR1, OCLN, TNFRSF19, PRRG3, SUSD6, ERRFI1, PIP5K1C, SLC22A6 | RFX7 | ANKRA2, RFXANK, OTUB1, RFX5 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for NEDD4_RFX7 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for NEDD4_RFX7 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | NEDD4 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
| Hgene | NEDD4 | C0022548 | Keloid | 1 | CTD_human |
| Hgene | NEDD4 | C0038325 | Stevens-Johnson Syndrome | 1 | CTD_human |
| Hgene | NEDD4 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|