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Fusion gene ID: 22427 |
FusionGeneSummary for MRC2_YBX3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MRC2_YBX3 | Fusion gene ID: 22427 | Hgene | Tgene | Gene symbol | MRC2 | YBX3 | Gene ID | 9902 | 8531 |
| Gene name | mannose receptor C type 2 | Y-box binding protein 3 | |
| Synonyms | CD280|CLEC13E|ENDO180|UPARAP | CSDA|CSDA1|DBPA|ZONAB | |
| Cytomap | 17q23.2 | 12p13.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | C-type mannose receptor 2C-type lectin domain family 13 member EUPAR-associated proteinendocytic receptor (macrophage mannose receptor family)endocytic receptor 180macrophage mannose receptor 2urokinase-type plasminogen activator receptor-associated | Y-box-binding protein 3DNA-binding protein AZO-1-associated nucleic acid-binding proteincold shock domain-containing protein Acold-shock domain containing A1cold-shock domain protein Asingle-strand DNA-binding protein NF-GMB | |
| Modification date | 20180523 | 20180527 | |
| UniProtAcc | Q9UBG0 | P16989 | |
| Ensembl transtripts involved in fusion gene | ENST00000303375, ENST00000446119, ENST00000580916, | ENST00000279550, ENST00000228251, ENST00000546164, | |
| Fusion gene scores | * DoF score | 9 X 7 X 5=315 | 5 X 5 X 3=75 |
| # samples | 10 | 7 | |
| ** MAII score | log2(10/315*10)=-1.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/75*10)=-0.0995356735509144 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: MRC2 [Title/Abstract] AND YBX3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MRC2 | GO:0030574 | collagen catabolic process | 12972549 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | AF074691 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - | ||
| ChiTaRS3.1 | AI110784 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3CDS | ENST00000303375 | ENST00000279550 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| 3UTR-3CDS | ENST00000303375 | ENST00000228251 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| 3UTR-5UTR | ENST00000303375 | ENST00000546164 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| 3UTR-3CDS | ENST00000446119 | ENST00000279550 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| 3UTR-3CDS | ENST00000446119 | ENST00000228251 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| 3UTR-5UTR | ENST00000446119 | ENST00000546164 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| intron-3CDS | ENST00000580916 | ENST00000279550 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| intron-3CDS | ENST00000580916 | ENST00000228251 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
| intron-5UTR | ENST00000580916 | ENST00000546164 | MRC2 | chr17 | 60770479 | + | YBX3 | chr12 | 10854691 | - |
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FusionProtFeatures for MRC2_YBX3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MRC2 | YBX3 |