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Fusion gene ID: 19291 |
FusionGeneSummary for KRTCAP2_PIGM |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: KRTCAP2_PIGM | Fusion gene ID: 19291 | Hgene | Tgene | Gene symbol | KRTCAP2 | PIGM | Gene ID | 200185 | 93183 |
| Gene name | keratinocyte associated protein 2 | phosphatidylinositol glycan anchor biosynthesis class M | |
| Synonyms | KCP2 | GPI-MT-I | |
| Cytomap | 1q22 | 1q23.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | keratinocyte-associated protein 2KCP-2keratinocytes associated protein 2 | GPI mannosyltransferase 1DPM:GlcN-(acyl-)PI mannosyltransferaseGPI mannosyltransferase IPIG-M mannosyltransferasedol-P-Man dependent GPI mannosyltransferasephosphatidylinositol-glycan biosynthesis class M protein | |
| Modification date | 20180519 | 20180522 | |
| UniProtAcc | Q8N6L1 | Q9H3S5 | |
| Ensembl transtripts involved in fusion gene | ENST00000295682, ENST00000490672, | ENST00000368090, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
| # samples | 1 | 1 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: KRTCAP2 [Title/Abstract] AND PIGM [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | AA215640 | KRTCAP2 | chr1 | 155144233 | - | PIGM | chr1 | 159999323 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3UTR | ENST00000295682 | ENST00000368090 | KRTCAP2 | chr1 | 155144233 | - | PIGM | chr1 | 159999323 | - |
| intron-3UTR | ENST00000490672 | ENST00000368090 | KRTCAP2 | chr1 | 155144233 | - | PIGM | chr1 | 159999323 | - |
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FusionProtFeatures for KRTCAP2_PIGM |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| KRTCAP2 | PIGM |