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Fusion gene ID: 17841 |
FusionGeneSummary for ITGA9_CTDSPL |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ITGA9_CTDSPL | Fusion gene ID: 17841 | Hgene | Tgene | Gene symbol | ITGA9 | CTDSPL | Gene ID | 3680 | 10217 |
| Gene name | integrin subunit alpha 9 | CTD small phosphatase like | |
| Synonyms | ALPHA-RLC|ITGA4L|RLC | C3orf8|HYA22|PSR1|RBSP3|SCP3 | |
| Cytomap | 3p22.2 | 3p22.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | integrin alpha-9integrin alpha-RLC | CTD small phosphatase-like proteinCTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-likeCTDSP-likeNIF-like proteinNLI-interacting factor 1RB protein serine phosphatase from chromosome 3carboxy-terminal domain RNA poly | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q13797 | O15194 | |
| Ensembl transtripts involved in fusion gene | ENST00000264741, ENST00000422441, | ENST00000443503, ENST00000273179, ENST00000310189, | |
| Fusion gene scores | * DoF score | 6 X 6 X 7=252 | 7 X 6 X 4=168 |
| # samples | 7 | 8 | |
| ** MAII score | log2(7/252*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/168*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ITGA9 [Title/Abstract] AND CTDSPL [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-AC-A2BK-01A | ITGA9 | chr3 | 37523098 | + | CTDSPL | chr3 | 37988548 | + |
| TCGA | LD | LUSC | TCGA-NC-A5HI-01A | ITGA9 | chr3 | 37670827 | + | CTDSPL | chr3 | 37988548 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000264741 | ENST00000443503 | ITGA9 | chr3 | 37523098 | + | CTDSPL | chr3 | 37988548 | + |
| In-frame | ENST00000264741 | ENST00000273179 | ITGA9 | chr3 | 37523098 | + | CTDSPL | chr3 | 37988548 | + |
| 5CDS-intron | ENST00000264741 | ENST00000310189 | ITGA9 | chr3 | 37523098 | + | CTDSPL | chr3 | 37988548 | + |
| In-frame | ENST00000422441 | ENST00000443503 | ITGA9 | chr3 | 37523098 | + | CTDSPL | chr3 | 37988548 | + |
| In-frame | ENST00000422441 | ENST00000273179 | ITGA9 | chr3 | 37523098 | + | CTDSPL | chr3 | 37988548 | + |
| 5CDS-intron | ENST00000422441 | ENST00000310189 | ITGA9 | chr3 | 37523098 | + | CTDSPL | chr3 | 37988548 | + |
| Frame-shift | ENST00000264741 | ENST00000443503 | ITGA9 | chr3 | 37670827 | + | CTDSPL | chr3 | 37988548 | + |
| Frame-shift | ENST00000264741 | ENST00000273179 | ITGA9 | chr3 | 37670827 | + | CTDSPL | chr3 | 37988548 | + |
| 5CDS-intron | ENST00000264741 | ENST00000310189 | ITGA9 | chr3 | 37670827 | + | CTDSPL | chr3 | 37988548 | + |
| Frame-shift | ENST00000422441 | ENST00000443503 | ITGA9 | chr3 | 37670827 | + | CTDSPL | chr3 | 37988548 | + |
| Frame-shift | ENST00000422441 | ENST00000273179 | ITGA9 | chr3 | 37670827 | + | CTDSPL | chr3 | 37988548 | + |
| 5CDS-intron | ENST00000422441 | ENST00000310189 | ITGA9 | chr3 | 37670827 | + | CTDSPL | chr3 | 37988548 | + |
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FusionProtFeatures for ITGA9_CTDSPL |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ITGA9 | CTDSPL |
| Integrin alpha-9/beta-1 (ITGA9:ITGB1) is a receptor forVCAM1, cytotactin and osteopontin. It recognizes the sequence A-E-I-D-G-I-E-L in cytotactin. {ECO:0000250}. | Recruited by REST to neuronal genes that contain RE-1elements, leading to neuronal gene silencing in non-neuronal cells(By similarity). Preferentially catalyzes the dephosphorylation of'Ser-5' within the tandem 7 residue repeats in the C-terminaldomain (CTD) of the largest RNA polymerase II subunit POLR2A.Negatively regulates RNA polymerase II transcription, possibly bycontrolling the transition from initiation/capping to processivetranscript elongation. {ECO:0000250, ECO:0000269|PubMed:12721286}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 111_174 | 181 | 1036 | Repeat | FG-GAP 2 |
| Hgene | ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 35_96 | 181 | 1036 | Repeat | FG-GAP 1 |
| Tgene | >CTDSPL | chr3:37523098 | chr3:37988548 | ENST00000273179 | + | 0 | 8 | 102_260 | 26 | 277 | Domain | FCP1 homology |
| Tgene | >CTDSPL | chr3:37523098 | chr3:37988548 | ENST00000443503 | + | 0 | 7 | 102_260 | 26 | 266 | Domain | FCP1 homology |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 312_320 | 181 | 1036 | Calcium binding | Ontology_term=ECO:0000255 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 373_381 | 181 | 1036 | Calcium binding | Ontology_term=ECO:0000255 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 435_443 | 181 | 1036 | Calcium binding | Ontology_term=ECO:0000255 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 1005_1009 | 181 | 1036 | Motif | Note=GFFKR motif |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 182_232 | 181 | 1036 | Repeat | FG-GAP 3 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 233_289 | 181 | 1036 | Repeat | FG-GAP 4 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 290_349 | 181 | 1036 | Repeat | FG-GAP 5 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 351_408 | 181 | 1036 | Repeat | FG-GAP 6 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 411_474 | 181 | 1036 | Repeat | FG-GAP 7 |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 1003_1035 | 181 | 1036 | Topological domain | Cytoplasmic |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 30_981 | 181 | 1036 | Topological domain | Extracellular |
| Hgene | >ITGA9 | chr3:37523098 | chr3:37988548 | ENST00000264741 | + | 4 | 28 | 982_1002 | 181 | 1036 | Transmembrane | Helical |
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FusionGeneSequence for ITGA9_CTDSPL |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_ITGA9_ENST00000264741_chr3_37523098_+_CTDSPL_ENST00000443503_chr3_37988548_+_421aa MGGPAAPRGAGRLRALLLALVVAGIPAGAYNLDPQRPVHFQGPADSFFGYAVLEHFHDNTRWVLVGAPKADSKYSPSVKSPGAVFKCRVH TNPDRRCTELDMARGKNRGTSCGKTCREDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYEADHILPHGFCYIIPSNLQAKGRTLIPCY EASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPIS NADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELS >In-frame_ITGA9_ENST00000264741_chr3_37523098_+_CTDSPL_ENST00000273179_chr3_37988548_+_432aa MGGPAAPRGAGRLRALLLALVVAGIPAGAYNLDPQRPVHFQGPADSFFGYAVLEHFHDNTRWVLVGAPKADSKYSPSVKSPGAVFKCRVH TNPDRRCTELDMARGKNRGTSCGKTCREDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYEADHILPHGFCYIIPSNLQAKGRTLIPCY EASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDE TLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYV >In-frame_ITGA9_ENST00000422441_chr3_37523098_+_CTDSPL_ENST00000443503_chr3_37988548_+_421aa MGGPAAPRGAGRLRALLLALVVAGIPAGAYNLDPQRPVHFQGPADSFFGYAVLEHFHDNTRWVLVGAPKADSKYSPSVKSPGAVFKCRVH TNPDRRCTELDMARGKNRGTSCGKTCREDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYEADHILPHGFCYIIPSNLQAKGRTLIPCY EASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPIS NADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELS >In-frame_ITGA9_ENST00000422441_chr3_37523098_+_CTDSPL_ENST00000273179_chr3_37988548_+_432aa MGGPAAPRGAGRLRALLLALVVAGIPAGAYNLDPQRPVHFQGPADSFFGYAVLEHFHDNTRWVLVGAPKADSKYSPSVKSPGAVFKCRVH TNPDRRCTELDMARGKNRGTSCGKTCREDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYEADHILPHGFCYIIPSNLQAKGRTLIPCY EASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDE TLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYV |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_ITGA9_ENST00000264741_chr3_37523098_+_CTDSPL_ENST00000443503_chr3_37988548_+_1263nt ATGGGCGGCCCGGCTGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTAC AACCTCGACCCGCAGCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACG CGCTGGGTCCTTGTGGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCAC ACCAACCCTGACCGGAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGC GATGATGAGTGGATGGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTAC TATGAAGCCGACCACATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTAT GAAGCCTCCCAGTGCAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTG GAGGCCCCTCCACCCAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGCCACCAGCTAAGTACCTTCTT CCAGAGGTGACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACATTGGTGCACAGTTCGTTTAAGCCTATTAGT AATGCTGATTTTATTGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTGCTGAAGCGGCCACATGTGGACGAGTTCCTCCAG AGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTGGCTGACCTCCTAGACCGCTGGGGT GTGTTCCGGGCCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAGGACCTGAGTCGCCTTGGGCGGGAGCTGAGC AAAGTGATCATTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCAGTGCCTGTGCAGTCCTGGTTCGATGACATGACG GACACGGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAGCATGCTGCACAGACTCTGCAATAGG >In-frame_ITGA9_ENST00000264741_chr3_37523098_+_CTDSPL_ENST00000273179_chr3_37988548_+_1296nt ATGGGCGGCCCGGCTGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTAC AACCTCGACCCGCAGCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACG CGCTGGGTCCTTGTGGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCAC ACCAACCCTGACCGGAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGC GATGATGAGTGGATGGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTAC TATGAAGCCGACCACATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTAT GAAGCCTCCCAGTGCAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTG GAGGCCCCTCCACCCAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGGGTGACCAGAGGCAGGTCATT CCCATACCAAGTCCACCAGCTAAGTACCTTCTTCCAGAGGTGACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAA ACATTGGTGCACAGTTCGTTTAAGCCTATTAGTAATGCTGATTTTATTGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTG CTGAAGCGGCCACATGTGGACGAGTTCCTCCAGAGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCA GACCCTGTGGCTGACCTCCTAGACCGCTGGGGTGTGTTCCGGGCCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTG AAGGACCTGAGTCGCCTTGGGCGGGAGCTGAGCAAAGTGATCATTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCA GTGCCTGTGCAGTCCTGGTTCGATGACATGACGGACACGGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGAC >In-frame_ITGA9_ENST00000422441_chr3_37523098_+_CTDSPL_ENST00000443503_chr3_37988548_+_1263nt ATGGGCGGCCCGGCTGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTAC AACCTCGACCCGCAGCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACG CGCTGGGTCCTTGTGGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCAC ACCAACCCTGACCGGAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGC GATGATGAGTGGATGGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTAC TATGAAGCCGACCACATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTAT GAAGCCTCCCAGTGCAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTG GAGGCCCCTCCACCCAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGCCACCAGCTAAGTACCTTCTT CCAGAGGTGACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACATTGGTGCACAGTTCGTTTAAGCCTATTAGT AATGCTGATTTTATTGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTGCTGAAGCGGCCACATGTGGACGAGTTCCTCCAG AGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTGGCTGACCTCCTAGACCGCTGGGGT GTGTTCCGGGCCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAGGACCTGAGTCGCCTTGGGCGGGAGCTGAGC AAAGTGATCATTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCAGTGCCTGTGCAGTCCTGGTTCGATGACATGACG GACACGGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAGCATGCTGCACAGACTCTGCAATAGG >In-frame_ITGA9_ENST00000422441_chr3_37523098_+_CTDSPL_ENST00000273179_chr3_37988548_+_1296nt ATGGGCGGCCCGGCTGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTAC AACCTCGACCCGCAGCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACG CGCTGGGTCCTTGTGGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCAC ACCAACCCTGACCGGAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGC GATGATGAGTGGATGGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTAC TATGAAGCCGACCACATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTAT GAAGCCTCCCAGTGCAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTG GAGGCCCCTCCACCCAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGGGTGACCAGAGGCAGGTCATT CCCATACCAAGTCCACCAGCTAAGTACCTTCTTCCAGAGGTGACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAA ACATTGGTGCACAGTTCGTTTAAGCCTATTAGTAATGCTGATTTTATTGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTG CTGAAGCGGCCACATGTGGACGAGTTCCTCCAGAGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCA GACCCTGTGGCTGACCTCCTAGACCGCTGGGGTGTGTTCCGGGCCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTG AAGGACCTGAGTCGCCTTGGGCGGGAGCTGAGCAAAGTGATCATTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCA GTGCCTGTGCAGTCCTGGTTCGATGACATGACGGACACGGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGAC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_ITGA9_ENST00000264741_chr3_37523098_+_CTDSPL_ENST00000443503_chr3_37988548_+_5121nt CCGGCCCGGGACCCGCTCGCGCAGACTTCTCGGGCGGACTGAGGACGCCGCCGCTCGGGGCCGCCCCTGTGCTCGCCTTCAGCGCCCGCT CAGCCCGCCGTCCGCGCCCCGGTGGCGGGCCCGACGCCCGCATTCCGCCCGTGTCCAGGCGCAGAGCTCCCGCCCCGGGGAGCTTCCTGG CCGTCGGCGGGCCCCGCGGCCCGCGCGCTCGGCGCCCTGCTCGCCGGGCAGAGGGGAAGGCGGCGGCCGGCTGGGGATGGGCGGCCCGGC TGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTACAACCTCGACCCGCA GCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACGCGCTGGGTCCTTGT GGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCACACCAACCCTGACCG GAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGCGATGATGAGTGGAT GGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTACTATGAAGCCGACCA CATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTATGAAGCCTCCCAGTG CAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTGGAGGCCCCTCCACC CAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGCCACCAGCTAAGTACCTTCTTCCAGAGGTGACGGT GCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACATTGGTGCACAGTTCGTTTAAGCCTATTAGTAATGCTGATTTTAT TGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTGCTGAAGCGGCCACATGTGGACGAGTTCCTCCAGAGGATGGGGCAGCT TTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTGGCTGACCTCCTAGACCGCTGGGGTGTGTTCCGGGCCCG GCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAGGACCTGAGTCGCCTTGGGCGGGAGCTGAGCAAAGTGATCATTGT TGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCAGTGCCTGTGCAGTCCTGGTTCGATGACATGACGGACACGGAGCTGCT GGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAGCATGCTGCACAGACTCTGCAATAGGTAGCCCTGGCCTCT GCCTGCCTCCCGCCTGTGCACTCTGGAACCTCTGGCCTCAGGGGACCTGCCTGTCCTCAGCTCCCTGGGAGCTGAAAGTGAGGATACTCC GTGCTCCAGGCCACAGGGTGAATGTGGCCATGCCTACCTGTTTTGTTTTTTTAAGAACAGAAACAACTATTTTAAAAGAACTCTTTTAAG AAATTTCATAAAGGGACATGCATTTTACTGGGTTTGCTTTTCTTAAAACATACCAAAAAAGAAAAAAATAGAAAAAAAAAAAAAAAAAGC TTGATCTCTATCAGACTTCCTTTCAACTGTCCTCCCCTCCAAGCAGACCACCTGTCCCCTTCTATCCCAGCTCAGAGCAGCTGACCCAAC TCAGAATCTCTTTCCTACAGGATGAAGTGCCTTTTGAATGTTATTTTAAGCCGAGAGTTAATTTTTCTACACAACATATTTCCAGACATC TTTTAGTCTTTTATTGTCTTAGATACTATAAGAAGATGAACATGACAATTTTCTAGAACCTGGTAGCGTGTGTGTGTGTGGCGGGGGGTG CTGAGGGAGGGGAGTGAGTCACAGGAGCCTGTCCCCCAACAGGTGTGACTGCTCTGACAACCTGTGGCATGCTGCAGGGTCAGGCTCCTG ATAGGAGGATTTCATGACTATGTCATTGTCTCCACTCATTTTTGACCCAGTTTGGAATGTATCTGCAATTGTGTGGCTCAACACTTTAGG AAACAATAGATTATTTTATATTATTATTTCTGATGGTGACAAGTTTGTCTTGAGGTCACATTTTCTCCTTGAAAAGTGACATCCTGTCAC TTCTGCTCTCACACTACTGCCATACATTTGTGTTTTTTGTTGTTATTGTTTGGGTAGAGCAGTTACAAGAAACCCTAAAACCCTTGGATA TAAAAGAAATCTGTTTATTGATTTTTAAATCTTTCCTTTCCAAAAGCTGGATACACATGGAGCTGTTTGGGAATTTTCCTTGCTGCTACC GCGCTGCCACCAAATGGAATTGACCAGCGGCTGTTACACTGTTCTTTGCCACTGTGCCTATGCTCAGAATATGCTCACTGCTAAGCTACA AACTCGGACAGGGTCAGAAACAGAGGTGTCCCATCCCATTGCAGCCTCCACCACCTGTAACCCCTTCCTGGCATTGGCCACTGAAGGGTA CAAAGGCAAAAGGACCACAGCACCACTTAGGTGTAGCATGGATTTTAAACTGCAGTCAGTATCAGATCCTGTTTGATAAATAAGCTGACT GTTCTCTCTTGAGAACCTGTGGCCTCAACCAGCCACCAAGCTGATGTGGCCCAAGTCCATCTCTTGGTCTTCTCCTTTGAAGCACAGCCT ATTTCTGAGCCAAGGGTTGGGGAAGCCTGTCTAGATGTGGGACTCATTGCCCCAAACCAGGGAGAGGAAGAGCTCCCACAGGGAGAGCCC AGGCTCTCTTTGCAGCCTTTCCCAGTTTGGTGTTTAAGCAGTGCCATGTTCCTTGTTTGACAACAAGACAGTCTGTAAAGTATTGCTCTT AAAAACAATTAAAAAGAACCCTTTCATATTGGCACCATTGCCTTAGTCCTCTGTGGGTTGGTCTTCAGCCAGCATTCTGGTGGGAGTGAC TGGCATTAACAAGACTGGAAATCGGGGGTCAAAGTAAAATATCTTTGTTTTGCTTTCATTCACAAAGTAATGAAGCCAGCTGCCAATTAC ATCCTCCCAACAGCACTTTGGTCTGTGGACTGCTGTGTGAATATTCAGAAGGGAAGTAAGTATTCAGGGGGTAAACAGGTCTCCCAGCAT TCTGAGTGTTCCAAACCAGTAATCCACATGCCAATTCAAATAGAACAGCCCCTTGCTAGATATTACCACAGATAATGACAGTTACATGGT AGAACTGCCCATGCCACAAATATTTATTTGGAAAAGTAGTCATTAAATGAACCCACTGCCTTAAATGTCTTGAATGTTGCAGTCAAGTGT CTGTCATGTGTTGATATCCACACAGAATTAGGCCCTAATGAGAGCCTTAGACCCTCAACCATGCCCCCTTCGTTGGCATCACAGGGCCTT ATTTGGAAGAGCGGGCAAAGAGGATGGAAATCATAAAATATTTCATGGGAATCGAACCTAGGGATAGTGCTCCACTTCTGACGATGGAGT GAAGACACTTGGCAGACTTGAGCCAGACACTTCACCTAGTAGTTCCTGAAACTGTGAGCACCACTGCACTAAGCCAGTGCGGAGCTGTTA GGGACGGGCCCAGCTCCTGCACCACGGACACAGAATGTCTGGAGAGGGCCAGCAGGCCCTCTGAGGGTTCTGGAATCTGTGCACCTTATT TGACCACACTCCAAAATTCTGTTTTTATTTTAACCCTTGAATCTGCTTTATGTACATAATCAAAATATCTATATCTATATCTATATCTAT ATCTATATATTTTTAATCATCTACATGTAAATGAAGCAATAGAATTCTAACATAAGGCCAAGAAATGAGACGAATGTTTGGGGTTTATGT TTTTTAAGGTAAATACGGGTATTGTTTTTAATTATTACCATGTATTAAATTGTGGGCTTTGAAACCTAATGAAACCTGTTAGCCACTTCT CTGTGCCATATACTTCCCATGTTACCAAAATACCCCCAACTCTTTAGCCAAAAGAGAACCCTGACCTCCTGAGTTTCCATGCTCCTTTCT GTACCAGGTTTAAATGTAGTCTTCTGGAGAAGTATTTTTGACATTGAGCTCTGGGACAGGACACCTTGGGTTTGTGGACTGCAGCCCACT ATGATGTTATTACTTCTCTGGCCAGGCCTCCAGTGGAAGTGCACAGGCACTCCCAATGTTGTTAATGCTCTGTCTTCCATTTGTTCTGGA ATCCTACGTGTTGGTCTGTGGTTCCATGCATTAGCTGTTTGTAAATAATGCATTTGCATACTGAAAAAGGAATGCCACCTGCCACAGTTG ATGGTGAGGAAGCTCCTTTGACGTGGTGCAATTTTGATGAGATGTCTCTGGGGACACGAGGATGCCCTAATGATGCTGACTTGTCATGGT TGCAGCATTTGAACTTTTGGTGTTAAAAAAAAAAACCTGTAAGTCTGTAACCTGGCAACATTTTACAACCCTGTATTTTTAAAGATGGCT TTCTAATAAAAAATCCAGAACCACACAGCCCTATGGTCAAACAATCCTACGTTTGTGCCTCTGCTTTTAAAGGTGCTGTGCTGGACAGTT GGCATGCCAGGGTTCGAGAAGAGTGAATGGCTTGACGTACTTGCAGTTAACTGTGCAAAATTGGCTGGCTGCCTCTGTTCCTACTGTACT GTAACTTTGATCATGTCTGTTCCTGTTCCATTCTCCCAGGAGCTTCTCTGCAGACTGACACACCCTCCCCCACCCCGGGTAGTGGAGATG CTGGTGTCTGGGTAGTCATGGATTTCTGCTGGACATTTGAATGTGATAAACAATCCAGCATTACTTAGGAAATGCTACATGCGGAATGTG >In-frame_ITGA9_ENST00000264741_chr3_37523098_+_CTDSPL_ENST00000273179_chr3_37988548_+_5154nt CCGGCCCGGGACCCGCTCGCGCAGACTTCTCGGGCGGACTGAGGACGCCGCCGCTCGGGGCCGCCCCTGTGCTCGCCTTCAGCGCCCGCT CAGCCCGCCGTCCGCGCCCCGGTGGCGGGCCCGACGCCCGCATTCCGCCCGTGTCCAGGCGCAGAGCTCCCGCCCCGGGGAGCTTCCTGG CCGTCGGCGGGCCCCGCGGCCCGCGCGCTCGGCGCCCTGCTCGCCGGGCAGAGGGGAAGGCGGCGGCCGGCTGGGGATGGGCGGCCCGGC TGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTACAACCTCGACCCGCA GCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACGCGCTGGGTCCTTGT GGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCACACCAACCCTGACCG GAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGCGATGATGAGTGGAT GGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTACTATGAAGCCGACCA CATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTATGAAGCCTCCCAGTG CAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTGGAGGCCCCTCCACC CAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGGGTGACCAGAGGCAGGTCATTCCCATACCAAGTCC ACCAGCTAAGTACCTTCTTCCAGAGGTGACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACATTGGTGCACAG TTCGTTTAAGCCTATTAGTAATGCTGATTTTATTGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTGCTGAAGCGGCCACA TGTGGACGAGTTCCTCCAGAGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTGGCTGA CCTCCTAGACCGCTGGGGTGTGTTCCGGGCCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAGGACCTGAGTCG CCTTGGGCGGGAGCTGAGCAAAGTGATCATTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCAGTGCCTGTGCAGTC CTGGTTCGATGACATGACGGACACGGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAGCATGCT GCACAGACTCTGCAATAGGTAGCCCTGGCCTCTGCCTGCCTCCCGCCTGTGCACTCTGGAACCTCTGGCCTCAGGGGACCTGCCTGTCCT CAGCTCCCTGGGAGCTGAAAGTGAGGATACTCCGTGCTCCAGGCCACAGGGTGAATGTGGCCATGCCTACCTGTTTTGTTTTTTTAAGAA CAGAAACAACTATTTTAAAAGAACTCTTTTAAGAAATTTCATAAAGGGACATGCATTTTACTGGGTTTGCTTTTCTTAAAACATACCAAA AAAGAAAAAAATAGAAAAAAAAAAAAAAAAAGCTTGATCTCTATCAGACTTCCTTTCAACTGTCCTCCCCTCCAAGCAGACCACCTGTCC CCTTCTATCCCAGCTCAGAGCAGCTGACCCAACTCAGAATCTCTTTCCTACAGGATGAAGTGCCTTTTGAATGTTATTTTAAGCCGAGAG TTAATTTTTCTACACAACATATTTCCAGACATCTTTTAGTCTTTTATTGTCTTAGATACTATAAGAAGATGAACATGACAATTTTCTAGA ACCTGGTAGCGTGTGTGTGTGTGGCGGGGGGTGCTGAGGGAGGGGAGTGAGTCACAGGAGCCTGTCCCCCAACAGGTGTGACTGCTCTGA CAACCTGTGGCATGCTGCAGGGTCAGGCTCCTGATAGGAGGATTTCATGACTATGTCATTGTCTCCACTCATTTTTGACCCAGTTTGGAA TGTATCTGCAATTGTGTGGCTCAACACTTTAGGAAACAATAGATTATTTTATATTATTATTTCTGATGGTGACAAGTTTGTCTTGAGGTC ACATTTTCTCCTTGAAAAGTGACATCCTGTCACTTCTGCTCTCACACTACTGCCATACATTTGTGTTTTTTGTTGTTATTGTTTGGGTAG AGCAGTTACAAGAAACCCTAAAACCCTTGGATATAAAAGAAATCTGTTTATTGATTTTTAAATCTTTCCTTTCCAAAAGCTGGATACACA TGGAGCTGTTTGGGAATTTTCCTTGCTGCTACCGCGCTGCCACCAAATGGAATTGACCAGCGGCTGTTACACTGTTCTTTGCCACTGTGC CTATGCTCAGAATATGCTCACTGCTAAGCTACAAACTCGGACAGGGTCAGAAACAGAGGTGTCCCATCCCATTGCAGCCTCCACCACCTG TAACCCCTTCCTGGCATTGGCCACTGAAGGGTACAAAGGCAAAAGGACCACAGCACCACTTAGGTGTAGCATGGATTTTAAACTGCAGTC AGTATCAGATCCTGTTTGATAAATAAGCTGACTGTTCTCTCTTGAGAACCTGTGGCCTCAACCAGCCACCAAGCTGATGTGGCCCAAGTC CATCTCTTGGTCTTCTCCTTTGAAGCACAGCCTATTTCTGAGCCAAGGGTTGGGGAAGCCTGTCTAGATGTGGGACTCATTGCCCCAAAC CAGGGAGAGGAAGAGCTCCCACAGGGAGAGCCCAGGCTCTCTTTGCAGCCTTTCCCAGTTTGGTGTTTAAGCAGTGCCATGTTCCTTGTT TGACAACAAGACAGTCTGTAAAGTATTGCTCTTAAAAACAATTAAAAAGAACCCTTTCATATTGGCACCATTGCCTTAGTCCTCTGTGGG TTGGTCTTCAGCCAGCATTCTGGTGGGAGTGACTGGCATTAACAAGACTGGAAATCGGGGGTCAAAGTAAAATATCTTTGTTTTGCTTTC ATTCACAAAGTAATGAAGCCAGCTGCCAATTACATCCTCCCAACAGCACTTTGGTCTGTGGACTGCTGTGTGAATATTCAGAAGGGAAGT AAGTATTCAGGGGGTAAACAGGTCTCCCAGCATTCTGAGTGTTCCAAACCAGTAATCCACATGCCAATTCAAATAGAACAGCCCCTTGCT AGATATTACCACAGATAATGACAGTTACATGGTAGAACTGCCCATGCCACAAATATTTATTTGGAAAAGTAGTCATTAAATGAACCCACT GCCTTAAATGTCTTGAATGTTGCAGTCAAGTGTCTGTCATGTGTTGATATCCACACAGAATTAGGCCCTAATGAGAGCCTTAGACCCTCA ACCATGCCCCCTTCGTTGGCATCACAGGGCCTTATTTGGAAGAGCGGGCAAAGAGGATGGAAATCATAAAATATTTCATGGGAATCGAAC CTAGGGATAGTGCTCCACTTCTGACGATGGAGTGAAGACACTTGGCAGACTTGAGCCAGACACTTCACCTAGTAGTTCCTGAAACTGTGA GCACCACTGCACTAAGCCAGTGCGGAGCTGTTAGGGACGGGCCCAGCTCCTGCACCACGGACACAGAATGTCTGGAGAGGGCCAGCAGGC CCTCTGAGGGTTCTGGAATCTGTGCACCTTATTTGACCACACTCCAAAATTCTGTTTTTATTTTAACCCTTGAATCTGCTTTATGTACAT AATCAAAATATCTATATCTATATCTATATCTATATCTATATATTTTTAATCATCTACATGTAAATGAAGCAATAGAATTCTAACATAAGG CCAAGAAATGAGACGAATGTTTGGGGTTTATGTTTTTTAAGGTAAATACGGGTATTGTTTTTAATTATTACCATGTATTAAATTGTGGGC TTTGAAACCTAATGAAACCTGTTAGCCACTTCTCTGTGCCATATACTTCCCATGTTACCAAAATACCCCCAACTCTTTAGCCAAAAGAGA ACCCTGACCTCCTGAGTTTCCATGCTCCTTTCTGTACCAGGTTTAAATGTAGTCTTCTGGAGAAGTATTTTTGACATTGAGCTCTGGGAC AGGACACCTTGGGTTTGTGGACTGCAGCCCACTATGATGTTATTACTTCTCTGGCCAGGCCTCCAGTGGAAGTGCACAGGCACTCCCAAT GTTGTTAATGCTCTGTCTTCCATTTGTTCTGGAATCCTACGTGTTGGTCTGTGGTTCCATGCATTAGCTGTTTGTAAATAATGCATTTGC ATACTGAAAAAGGAATGCCACCTGCCACAGTTGATGGTGAGGAAGCTCCTTTGACGTGGTGCAATTTTGATGAGATGTCTCTGGGGACAC GAGGATGCCCTAATGATGCTGACTTGTCATGGTTGCAGCATTTGAACTTTTGGTGTTAAAAAAAAAAACCTGTAAGTCTGTAACCTGGCA ACATTTTACAACCCTGTATTTTTAAAGATGGCTTTCTAATAAAAAATCCAGAACCACACAGCCCTATGGTCAAACAATCCTACGTTTGTG CCTCTGCTTTTAAAGGTGCTGTGCTGGACAGTTGGCATGCCAGGGTTCGAGAAGAGTGAATGGCTTGACGTACTTGCAGTTAACTGTGCA AAATTGGCTGGCTGCCTCTGTTCCTACTGTACTGTAACTTTGATCATGTCTGTTCCTGTTCCATTCTCCCAGGAGCTTCTCTGCAGACTG ACACACCCTCCCCCACCCCGGGTAGTGGAGATGCTGGTGTCTGGGTAGTCATGGATTTCTGCTGGACATTTGAATGTGATAAACAATCCA GCATTACTTAGGAAATGCTACATGCGGAATGTGCACGTTTCCAGGGGCGAGTATTGTCAATCAAAAGGTTTGCAATGATTTCCTTCCTGC >In-frame_ITGA9_ENST00000422441_chr3_37523098_+_CTDSPL_ENST00000443503_chr3_37988548_+_5125nt CCGCCCGGCCCGGGACCCGCTCGCGCAGACTTCTCGGGCGGACTGAGGACGCCGCCGCTCGGGGCCGCCCCTGTGCTCGCCTTCAGCGCC CGCTCAGCCCGCCGTCCGCGCCCCGGTGGCGGGCCCGACGCCCGCATTCCGCCCGTGTCCAGGCGCAGAGCTCCCGCCCCGGGGAGCTTC CTGGCCGTCGGCGGGCCCCGCGGCCCGCGCGCTCGGCGCCCTGCTCGCCGGGCAGAGGGGAAGGCGGCGGCCGGCTGGGGATGGGCGGCC CGGCTGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTACAACCTCGACC CGCAGCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACGCGCTGGGTCC TTGTGGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCACACCAACCCTG ACCGGAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGCGATGATGAGT GGATGGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTACTATGAAGCCG ACCACATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTATGAAGCCTCCC AGTGCAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTGGAGGCCCCTC CACCCAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGCCACCAGCTAAGTACCTTCTTCCAGAGGTGA CGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACATTGGTGCACAGTTCGTTTAAGCCTATTAGTAATGCTGATT TTATTGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTGCTGAAGCGGCCACATGTGGACGAGTTCCTCCAGAGGATGGGGC AGCTTTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTGGCTGACCTCCTAGACCGCTGGGGTGTGTTCCGGG CCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAGGACCTGAGTCGCCTTGGGCGGGAGCTGAGCAAAGTGATCA TTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCAGTGCCTGTGCAGTCCTGGTTCGATGACATGACGGACACGGAGC TGCTGGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAGCATGCTGCACAGACTCTGCAATAGGTAGCCCTGGC CTCTGCCTGCCTCCCGCCTGTGCACTCTGGAACCTCTGGCCTCAGGGGACCTGCCTGTCCTCAGCTCCCTGGGAGCTGAAAGTGAGGATA CTCCGTGCTCCAGGCCACAGGGTGAATGTGGCCATGCCTACCTGTTTTGTTTTTTTAAGAACAGAAACAACTATTTTAAAAGAACTCTTT TAAGAAATTTCATAAAGGGACATGCATTTTACTGGGTTTGCTTTTCTTAAAACATACCAAAAAAGAAAAAAATAGAAAAAAAAAAAAAAA AAGCTTGATCTCTATCAGACTTCCTTTCAACTGTCCTCCCCTCCAAGCAGACCACCTGTCCCCTTCTATCCCAGCTCAGAGCAGCTGACC CAACTCAGAATCTCTTTCCTACAGGATGAAGTGCCTTTTGAATGTTATTTTAAGCCGAGAGTTAATTTTTCTACACAACATATTTCCAGA CATCTTTTAGTCTTTTATTGTCTTAGATACTATAAGAAGATGAACATGACAATTTTCTAGAACCTGGTAGCGTGTGTGTGTGTGGCGGGG GGTGCTGAGGGAGGGGAGTGAGTCACAGGAGCCTGTCCCCCAACAGGTGTGACTGCTCTGACAACCTGTGGCATGCTGCAGGGTCAGGCT CCTGATAGGAGGATTTCATGACTATGTCATTGTCTCCACTCATTTTTGACCCAGTTTGGAATGTATCTGCAATTGTGTGGCTCAACACTT TAGGAAACAATAGATTATTTTATATTATTATTTCTGATGGTGACAAGTTTGTCTTGAGGTCACATTTTCTCCTTGAAAAGTGACATCCTG TCACTTCTGCTCTCACACTACTGCCATACATTTGTGTTTTTTGTTGTTATTGTTTGGGTAGAGCAGTTACAAGAAACCCTAAAACCCTTG GATATAAAAGAAATCTGTTTATTGATTTTTAAATCTTTCCTTTCCAAAAGCTGGATACACATGGAGCTGTTTGGGAATTTTCCTTGCTGC TACCGCGCTGCCACCAAATGGAATTGACCAGCGGCTGTTACACTGTTCTTTGCCACTGTGCCTATGCTCAGAATATGCTCACTGCTAAGC TACAAACTCGGACAGGGTCAGAAACAGAGGTGTCCCATCCCATTGCAGCCTCCACCACCTGTAACCCCTTCCTGGCATTGGCCACTGAAG GGTACAAAGGCAAAAGGACCACAGCACCACTTAGGTGTAGCATGGATTTTAAACTGCAGTCAGTATCAGATCCTGTTTGATAAATAAGCT GACTGTTCTCTCTTGAGAACCTGTGGCCTCAACCAGCCACCAAGCTGATGTGGCCCAAGTCCATCTCTTGGTCTTCTCCTTTGAAGCACA GCCTATTTCTGAGCCAAGGGTTGGGGAAGCCTGTCTAGATGTGGGACTCATTGCCCCAAACCAGGGAGAGGAAGAGCTCCCACAGGGAGA GCCCAGGCTCTCTTTGCAGCCTTTCCCAGTTTGGTGTTTAAGCAGTGCCATGTTCCTTGTTTGACAACAAGACAGTCTGTAAAGTATTGC TCTTAAAAACAATTAAAAAGAACCCTTTCATATTGGCACCATTGCCTTAGTCCTCTGTGGGTTGGTCTTCAGCCAGCATTCTGGTGGGAG TGACTGGCATTAACAAGACTGGAAATCGGGGGTCAAAGTAAAATATCTTTGTTTTGCTTTCATTCACAAAGTAATGAAGCCAGCTGCCAA TTACATCCTCCCAACAGCACTTTGGTCTGTGGACTGCTGTGTGAATATTCAGAAGGGAAGTAAGTATTCAGGGGGTAAACAGGTCTCCCA GCATTCTGAGTGTTCCAAACCAGTAATCCACATGCCAATTCAAATAGAACAGCCCCTTGCTAGATATTACCACAGATAATGACAGTTACA TGGTAGAACTGCCCATGCCACAAATATTTATTTGGAAAAGTAGTCATTAAATGAACCCACTGCCTTAAATGTCTTGAATGTTGCAGTCAA GTGTCTGTCATGTGTTGATATCCACACAGAATTAGGCCCTAATGAGAGCCTTAGACCCTCAACCATGCCCCCTTCGTTGGCATCACAGGG CCTTATTTGGAAGAGCGGGCAAAGAGGATGGAAATCATAAAATATTTCATGGGAATCGAACCTAGGGATAGTGCTCCACTTCTGACGATG GAGTGAAGACACTTGGCAGACTTGAGCCAGACACTTCACCTAGTAGTTCCTGAAACTGTGAGCACCACTGCACTAAGCCAGTGCGGAGCT GTTAGGGACGGGCCCAGCTCCTGCACCACGGACACAGAATGTCTGGAGAGGGCCAGCAGGCCCTCTGAGGGTTCTGGAATCTGTGCACCT TATTTGACCACACTCCAAAATTCTGTTTTTATTTTAACCCTTGAATCTGCTTTATGTACATAATCAAAATATCTATATCTATATCTATAT CTATATCTATATATTTTTAATCATCTACATGTAAATGAAGCAATAGAATTCTAACATAAGGCCAAGAAATGAGACGAATGTTTGGGGTTT ATGTTTTTTAAGGTAAATACGGGTATTGTTTTTAATTATTACCATGTATTAAATTGTGGGCTTTGAAACCTAATGAAACCTGTTAGCCAC TTCTCTGTGCCATATACTTCCCATGTTACCAAAATACCCCCAACTCTTTAGCCAAAAGAGAACCCTGACCTCCTGAGTTTCCATGCTCCT TTCTGTACCAGGTTTAAATGTAGTCTTCTGGAGAAGTATTTTTGACATTGAGCTCTGGGACAGGACACCTTGGGTTTGTGGACTGCAGCC CACTATGATGTTATTACTTCTCTGGCCAGGCCTCCAGTGGAAGTGCACAGGCACTCCCAATGTTGTTAATGCTCTGTCTTCCATTTGTTC TGGAATCCTACGTGTTGGTCTGTGGTTCCATGCATTAGCTGTTTGTAAATAATGCATTTGCATACTGAAAAAGGAATGCCACCTGCCACA GTTGATGGTGAGGAAGCTCCTTTGACGTGGTGCAATTTTGATGAGATGTCTCTGGGGACACGAGGATGCCCTAATGATGCTGACTTGTCA TGGTTGCAGCATTTGAACTTTTGGTGTTAAAAAAAAAAACCTGTAAGTCTGTAACCTGGCAACATTTTACAACCCTGTATTTTTAAAGAT GGCTTTCTAATAAAAAATCCAGAACCACACAGCCCTATGGTCAAACAATCCTACGTTTGTGCCTCTGCTTTTAAAGGTGCTGTGCTGGAC AGTTGGCATGCCAGGGTTCGAGAAGAGTGAATGGCTTGACGTACTTGCAGTTAACTGTGCAAAATTGGCTGGCTGCCTCTGTTCCTACTG TACTGTAACTTTGATCATGTCTGTTCCTGTTCCATTCTCCCAGGAGCTTCTCTGCAGACTGACACACCCTCCCCCACCCCGGGTAGTGGA GATGCTGGTGTCTGGGTAGTCATGGATTTCTGCTGGACATTTGAATGTGATAAACAATCCAGCATTACTTAGGAAATGCTACATGCGGAA >In-frame_ITGA9_ENST00000422441_chr3_37523098_+_CTDSPL_ENST00000273179_chr3_37988548_+_5158nt CCGCCCGGCCCGGGACCCGCTCGCGCAGACTTCTCGGGCGGACTGAGGACGCCGCCGCTCGGGGCCGCCCCTGTGCTCGCCTTCAGCGCC CGCTCAGCCCGCCGTCCGCGCCCCGGTGGCGGGCCCGACGCCCGCATTCCGCCCGTGTCCAGGCGCAGAGCTCCCGCCCCGGGGAGCTTC CTGGCCGTCGGCGGGCCCCGCGGCCCGCGCGCTCGGCGCCCTGCTCGCCGGGCAGAGGGGAAGGCGGCGGCCGGCTGGGGATGGGCGGCC CGGCTGCGCCGAGGGGCGCCGGGAGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGTCGCGGGGATCCCCGCGGGCGCCTACAACCTCGACC CGCAGCGCCCCGTGCACTTCCAGGGCCCCGCTGACTCGTTCTTCGGCTACGCAGTTCTGGAGCATTTCCACGACAACACGCGCTGGGTCC TTGTGGGCGCACCAAAGGCAGATTCCAAATACAGCCCTTCAGTGAAGTCTCCTGGGGCTGTGTTTAAGTGCCGTGTTCACACCAACCCTG ACCGGAGATGCACCGAACTGGACATGGCTCGAGGGAAGAATCGGGGCACGTCCTGCGGAAAGACCTGCCGGGAAGACCGCGATGATGAGT GGATGGGGGTGAGCCTGGCCCGACAGCCCAAGGCTGATGGCCGTGTGTTGGCCTGTGCTCATCGCTGGAAGAACATCTACTATGAAGCCG ACCACATCCTACCCCATGGCTTCTGCTACATCATCCCCTCCAACCTCCAGGCCAAAGGCAGGACGCTGATCCCTTGCTATGAAGCCTCCC AGTGCAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTGGAGGCCCCTC CACCCAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGGGTGACCAGAGGCAGGTCATTCCCATACCAA GTCCACCAGCTAAGTACCTTCTTCCAGAGGTGACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACATTGGTGC ACAGTTCGTTTAAGCCTATTAGTAATGCTGATTTTATTGTTCCGGTTGAAATCGATGGAACTATACATCAGGTGTATGTGCTGAAGCGGC CACATGTGGACGAGTTCCTCCAGAGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTGG CTGACCTCCTAGACCGCTGGGGTGTGTTCCGGGCCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAGGACCTGA GTCGCCTTGGGCGGGAGCTGAGCAAAGTGATCATTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGAATGCAGTGCCTGTGC AGTCCTGGTTCGATGACATGACGGACACGGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAGCA TGCTGCACAGACTCTGCAATAGGTAGCCCTGGCCTCTGCCTGCCTCCCGCCTGTGCACTCTGGAACCTCTGGCCTCAGGGGACCTGCCTG TCCTCAGCTCCCTGGGAGCTGAAAGTGAGGATACTCCGTGCTCCAGGCCACAGGGTGAATGTGGCCATGCCTACCTGTTTTGTTTTTTTA AGAACAGAAACAACTATTTTAAAAGAACTCTTTTAAGAAATTTCATAAAGGGACATGCATTTTACTGGGTTTGCTTTTCTTAAAACATAC CAAAAAAGAAAAAAATAGAAAAAAAAAAAAAAAAAGCTTGATCTCTATCAGACTTCCTTTCAACTGTCCTCCCCTCCAAGCAGACCACCT GTCCCCTTCTATCCCAGCTCAGAGCAGCTGACCCAACTCAGAATCTCTTTCCTACAGGATGAAGTGCCTTTTGAATGTTATTTTAAGCCG AGAGTTAATTTTTCTACACAACATATTTCCAGACATCTTTTAGTCTTTTATTGTCTTAGATACTATAAGAAGATGAACATGACAATTTTC TAGAACCTGGTAGCGTGTGTGTGTGTGGCGGGGGGTGCTGAGGGAGGGGAGTGAGTCACAGGAGCCTGTCCCCCAACAGGTGTGACTGCT CTGACAACCTGTGGCATGCTGCAGGGTCAGGCTCCTGATAGGAGGATTTCATGACTATGTCATTGTCTCCACTCATTTTTGACCCAGTTT GGAATGTATCTGCAATTGTGTGGCTCAACACTTTAGGAAACAATAGATTATTTTATATTATTATTTCTGATGGTGACAAGTTTGTCTTGA GGTCACATTTTCTCCTTGAAAAGTGACATCCTGTCACTTCTGCTCTCACACTACTGCCATACATTTGTGTTTTTTGTTGTTATTGTTTGG GTAGAGCAGTTACAAGAAACCCTAAAACCCTTGGATATAAAAGAAATCTGTTTATTGATTTTTAAATCTTTCCTTTCCAAAAGCTGGATA CACATGGAGCTGTTTGGGAATTTTCCTTGCTGCTACCGCGCTGCCACCAAATGGAATTGACCAGCGGCTGTTACACTGTTCTTTGCCACT GTGCCTATGCTCAGAATATGCTCACTGCTAAGCTACAAACTCGGACAGGGTCAGAAACAGAGGTGTCCCATCCCATTGCAGCCTCCACCA CCTGTAACCCCTTCCTGGCATTGGCCACTGAAGGGTACAAAGGCAAAAGGACCACAGCACCACTTAGGTGTAGCATGGATTTTAAACTGC AGTCAGTATCAGATCCTGTTTGATAAATAAGCTGACTGTTCTCTCTTGAGAACCTGTGGCCTCAACCAGCCACCAAGCTGATGTGGCCCA AGTCCATCTCTTGGTCTTCTCCTTTGAAGCACAGCCTATTTCTGAGCCAAGGGTTGGGGAAGCCTGTCTAGATGTGGGACTCATTGCCCC AAACCAGGGAGAGGAAGAGCTCCCACAGGGAGAGCCCAGGCTCTCTTTGCAGCCTTTCCCAGTTTGGTGTTTAAGCAGTGCCATGTTCCT TGTTTGACAACAAGACAGTCTGTAAAGTATTGCTCTTAAAAACAATTAAAAAGAACCCTTTCATATTGGCACCATTGCCTTAGTCCTCTG TGGGTTGGTCTTCAGCCAGCATTCTGGTGGGAGTGACTGGCATTAACAAGACTGGAAATCGGGGGTCAAAGTAAAATATCTTTGTTTTGC TTTCATTCACAAAGTAATGAAGCCAGCTGCCAATTACATCCTCCCAACAGCACTTTGGTCTGTGGACTGCTGTGTGAATATTCAGAAGGG AAGTAAGTATTCAGGGGGTAAACAGGTCTCCCAGCATTCTGAGTGTTCCAAACCAGTAATCCACATGCCAATTCAAATAGAACAGCCCCT TGCTAGATATTACCACAGATAATGACAGTTACATGGTAGAACTGCCCATGCCACAAATATTTATTTGGAAAAGTAGTCATTAAATGAACC CACTGCCTTAAATGTCTTGAATGTTGCAGTCAAGTGTCTGTCATGTGTTGATATCCACACAGAATTAGGCCCTAATGAGAGCCTTAGACC CTCAACCATGCCCCCTTCGTTGGCATCACAGGGCCTTATTTGGAAGAGCGGGCAAAGAGGATGGAAATCATAAAATATTTCATGGGAATC GAACCTAGGGATAGTGCTCCACTTCTGACGATGGAGTGAAGACACTTGGCAGACTTGAGCCAGACACTTCACCTAGTAGTTCCTGAAACT GTGAGCACCACTGCACTAAGCCAGTGCGGAGCTGTTAGGGACGGGCCCAGCTCCTGCACCACGGACACAGAATGTCTGGAGAGGGCCAGC AGGCCCTCTGAGGGTTCTGGAATCTGTGCACCTTATTTGACCACACTCCAAAATTCTGTTTTTATTTTAACCCTTGAATCTGCTTTATGT ACATAATCAAAATATCTATATCTATATCTATATCTATATCTATATATTTTTAATCATCTACATGTAAATGAAGCAATAGAATTCTAACAT AAGGCCAAGAAATGAGACGAATGTTTGGGGTTTATGTTTTTTAAGGTAAATACGGGTATTGTTTTTAATTATTACCATGTATTAAATTGT GGGCTTTGAAACCTAATGAAACCTGTTAGCCACTTCTCTGTGCCATATACTTCCCATGTTACCAAAATACCCCCAACTCTTTAGCCAAAA GAGAACCCTGACCTCCTGAGTTTCCATGCTCCTTTCTGTACCAGGTTTAAATGTAGTCTTCTGGAGAAGTATTTTTGACATTGAGCTCTG GGACAGGACACCTTGGGTTTGTGGACTGCAGCCCACTATGATGTTATTACTTCTCTGGCCAGGCCTCCAGTGGAAGTGCACAGGCACTCC CAATGTTGTTAATGCTCTGTCTTCCATTTGTTCTGGAATCCTACGTGTTGGTCTGTGGTTCCATGCATTAGCTGTTTGTAAATAATGCAT TTGCATACTGAAAAAGGAATGCCACCTGCCACAGTTGATGGTGAGGAAGCTCCTTTGACGTGGTGCAATTTTGATGAGATGTCTCTGGGG ACACGAGGATGCCCTAATGATGCTGACTTGTCATGGTTGCAGCATTTGAACTTTTGGTGTTAAAAAAAAAAACCTGTAAGTCTGTAACCT GGCAACATTTTACAACCCTGTATTTTTAAAGATGGCTTTCTAATAAAAAATCCAGAACCACACAGCCCTATGGTCAAACAATCCTACGTT TGTGCCTCTGCTTTTAAAGGTGCTGTGCTGGACAGTTGGCATGCCAGGGTTCGAGAAGAGTGAATGGCTTGACGTACTTGCAGTTAACTG TGCAAAATTGGCTGGCTGCCTCTGTTCCTACTGTACTGTAACTTTGATCATGTCTGTTCCTGTTCCATTCTCCCAGGAGCTTCTCTGCAG ACTGACACACCCTCCCCCACCCCGGGTAGTGGAGATGCTGGTGTCTGGGTAGTCATGGATTTCTGCTGGACATTTGAATGTGATAAACAA TCCAGCATTACTTAGGAAATGCTACATGCGGAATGTGCACGTTTCCAGGGGCGAGTATTGTCAATCAAAAGGTTTGCAATGATTTCCTTC |
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FusionGenePPI for ITGA9_CTDSPL |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ITGA9 | ITGB1, ALDH1A3, LCN2, SERPINB4, SPRR1B, PCYOX1L, SMOC1, IGLL5, KLK10, IVL, HSPA5, CALML5, EVPL, IGKC, TUBA4A | CTDSPL | SNAI1, ELAVL1, CTDSP1, CDCA3, TBC1D4, ARVCF, CADM1, RFTN1, PACS1, DAB2IP, ARHGAP39, CD44, ABCC1, ATP2B4, NOTCH1, PVRL2, MCAM, ITGA5, USP31, C2CD4C, TBC1D10B, TIAM1, ITGA6, KIRREL, SPTBN2, PPP1R9A, CDC42EP1, TMEM2, CACHD1, MICAL3, ANK3, FMN2, ROBO1, MPZL1, ADD2, PALM2, NUMBL, AKAP5, SLC30A1, KIAA1549, CTNNA1, FLVCR1, SLC29A1, CXADR, FAM171B, TTC7B, PCDH7, MARVELD2, NF2, SLC39A6, BASP1, CNNM3, SLC39A10, CLCN7, GPRIN3, ESYT2, FAM171A1, LPHN2, RELL1, SLC12A7, NUMB, CEP89, SLC12A2, CTNND1, DTNA, CCDC8, SLC38A1, TJP1, ZDHHC5, PALM, EGFR, PTPN14, TULP3, FAM129B, GPRIN1, HSPA12A, ATP2B1, EFR3B, SLC3A2, ARL13B, PSD3, MBP, FGFR2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ITGA9_CTDSPL |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ITGA9_CTDSPL |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | ITGA9 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
| Hgene | ITGA9 | C1839839 | MAJOR AFFECTIVE DISORDER 2 | 1 | PSYGENET |
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