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Fusion gene ID: 14702 |
FusionGeneSummary for GLG1_GLG1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: GLG1_GLG1 | Fusion gene ID: 14702 | Hgene | Tgene | Gene symbol | GLG1 | GLG1 | Gene ID | 2734 | 2734 |
| Gene name | golgi glycoprotein 1 | golgi glycoprotein 1 | |
| Synonyms | CFR-1|ESL-1|MG-160|MG160 | CFR-1|ESL-1|MG-160|MG160 | |
| Cytomap | 16q23.1 | 16q23.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | Golgi apparatus protein 1E-selectin ligand 1cysteine-rich fibroblast growth factor receptorgolgi sialoglycoprotein MG-160 | Golgi apparatus protein 1E-selectin ligand 1cysteine-rich fibroblast growth factor receptorgolgi sialoglycoprotein MG-160 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q92896 | Q92896 | |
| Ensembl transtripts involved in fusion gene | ENST00000205061, ENST00000422840, ENST00000447066, | ENST00000205061, ENST00000422840, ENST00000447066, | |
| Fusion gene scores | * DoF score | 10 X 10 X 9=900 | 6 X 6 X 3=108 |
| # samples | 13 | 6 | |
| ** MAII score | log2(13/900*10)=-2.79141337818858 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/108*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: GLG1 [Title/Abstract] AND GLG1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | CB122593 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000205061 | ENST00000205061 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000205061 | ENST00000422840 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000205061 | ENST00000447066 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000422840 | ENST00000205061 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000422840 | ENST00000422840 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000422840 | ENST00000447066 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000447066 | ENST00000205061 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000447066 | ENST00000422840 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
| intron-3CDS | ENST00000447066 | ENST00000447066 | GLG1 | chr16 | 74525115 | + | GLG1 | chr16 | 74525044 | - |
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FusionProtFeatures for GLG1_GLG1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| GLG1 | GLG1 |