|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 14372 |
FusionGeneSummary for GARNL3_GARNL3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: GARNL3_GARNL3 | Fusion gene ID: 14372 | Hgene | Tgene | Gene symbol | GARNL3 | GARNL3 | Gene ID | 84253 | 84253 |
| Gene name | GTPase activating Rap/RanGAP domain like 3 | GTPase activating Rap/RanGAP domain like 3 | |
| Synonyms | bA356B19.1 | bA356B19.1 | |
| Cytomap | 9q33.3 | 9q33.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | GTPase-activating Rap/Ran-GAP domain-like protein 3GTPase activating RANGAP domain-like 3 | GTPase-activating Rap/Ran-GAP domain-like protein 3GTPase activating RANGAP domain-like 3 | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q5VVW2 | Q5VVW2 | |
| Ensembl transtripts involved in fusion gene | ENST00000435213, ENST00000314904, ENST00000373387, ENST00000496711, | ENST00000435213, ENST00000314904, ENST00000373387, ENST00000496711, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 6 X 7 X 7=294 |
| # samples | 2 | 8 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(8/294*10)=-1.877744249949 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: GARNL3 [Title/Abstract] AND GARNL3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | T05476 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000435213 | ENST00000435213 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000435213 | ENST00000314904 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000435213 | ENST00000373387 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000435213 | ENST00000496711 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000314904 | ENST00000435213 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000314904 | ENST00000314904 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000314904 | ENST00000373387 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000314904 | ENST00000496711 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000373387 | ENST00000435213 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000373387 | ENST00000314904 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000373387 | ENST00000373387 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000373387 | ENST00000496711 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000496711 | ENST00000435213 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000496711 | ENST00000314904 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000496711 | ENST00000373387 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
| intron-intron | ENST00000496711 | ENST00000496711 | GARNL3 | chr9 | 130131176 | - | GARNL3 | chr9 | 130134933 | - |
Top |
FusionProtFeatures for GARNL3_GARNL3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| GARNL3 | GARNL3 |