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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 11739

FusionGeneSummary for EPB41L2_PTPRK

check button Fusion gene summary
Fusion gene informationFusion gene name: EPB41L2_PTPRK
Fusion gene ID: 11739
HgeneTgene
Gene symbol

EPB41L2

PTPRK

Gene ID

2037

5796

Gene nameerythrocyte membrane protein band 4.1 like 2protein tyrosine phosphatase, receptor type K
Synonyms4.1-G|4.1GR-PTP-kappa
Cytomap

6q23.1-q23.2

6q22.33

Type of geneprotein-codingprotein-coding
Descriptionband 4.1-like protein 2erythrocyte membrane protein band 4.1 like-protein 2generally expressed protein 4.1receptor-type tyrosine-protein phosphatase kappadJ480J14.2.1 (protein tyrosine phosphatase, receptor type, K (R-PTP-KAPPA, protein tyrosine phosphatase kappa , protein tyrosine phosphatase kappaprotein-tyrosine phosphatase kappaprotein-tyrosine phospha
Modification date2018052320180519
UniProtAcc

O43491

Q15262

Ensembl transtripts involved in fusion geneENST00000528282, ENST00000530481, 
ENST00000445890, ENST00000337057, 
ENST00000530757, ENST00000392427, 
ENST00000368128, ENST00000527411, 
ENST00000524581, ENST00000525271, 
ENST00000525193, ENST00000527659, 
ENST00000529208, ENST00000531410, 
ENST00000530148, 
ENST00000368226, 
ENST00000368227, ENST00000532331, 
ENST00000368213, ENST00000368210, 
ENST00000368215, ENST00000368207, 
ENST00000524481, ENST00000525459, 
Fusion gene scores* DoF score8 X 5 X 5=20010 X 8 X 7=560
# samples 911
** MAII scorelog2(9/200*10)=-1.15200309344505
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(11/560*10)=-2.34792330342031
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: EPB41L2 [Title/Abstract] AND PTPRK [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, in-frame but not retained their domain.
Tumor suppressor gene involved fusion gene, retained protein feature but frameshift.
DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePTPRK

GO:0006470

protein dephosphorylation

16263724

TgenePTPRK

GO:0007165

signal transduction

16849327

TgenePTPRK

GO:0007179

transforming growth factor beta receptor signaling pathway

15899872

TgenePTPRK

GO:0008285

negative regulation of cell proliferation

15899872|18276111

TgenePTPRK

GO:0010839

negative regulation of keratinocyte proliferation

16263724

TgenePTPRK

GO:0030336

negative regulation of cell migration

18276111

TgenePTPRK

GO:0034394

protein localization to cell surface

18276111

TgenePTPRK

GO:0034614

cellular response to reactive oxygen species

16849327

TgenePTPRK

GO:0034644

cellular response to UV

16849327

TgenePTPRK

GO:0045786

negative regulation of cell cycle

15899872

TgenePTPRK

GO:0045892

negative regulation of transcription, DNA-templated

18276111


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSARCTCGA-IF-A3RQ-01AEPB41L2chr6

131276245

-PTPRKchr6

128330413

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000528282ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000528282ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000528282ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000528282ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000528282ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000528282ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000528282ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000528282ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000528282ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000530481ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000530481ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000530481ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000530481ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000530481ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000530481ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000530481ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000530481ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000530481ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000445890ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000445890ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000445890ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000445890ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000445890ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000445890ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000445890ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000445890ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000445890ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000337057ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000337057ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000337057ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000337057ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000337057ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000337057ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000337057ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000337057ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000337057ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530757ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530757ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530757ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530757ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530757ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530757ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530757ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-5UTRENST00000530757ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-intronENST00000530757ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000392427ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000392427ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000392427ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000392427ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000392427ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000392427ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
In-frameENST00000392427ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000392427ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000392427ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000368128ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000368128ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000368128ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000368128ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000368128ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000368128ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000368128ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000368128ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000368128ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527411ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527411ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527411ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527411ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527411ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527411ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527411ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000527411ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000527411ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000524581ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000524581ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000524581ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000524581ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000524581ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000524581ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000524581ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-5UTRENST00000524581ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-intronENST00000524581ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525271ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525271ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525271ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525271ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525271ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525271ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525271ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000525271ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000525271ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525193ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525193ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525193ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525193ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525193ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525193ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000525193ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000525193ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000525193ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527659ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527659ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527659ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527659ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527659ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527659ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000527659ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000527659ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000527659ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000529208ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000529208ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000529208ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000529208ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000529208ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000529208ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
Frame-shiftENST00000529208ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-5UTRENST00000529208ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
5CDS-intronENST00000529208ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000531410ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000531410ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000531410ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000531410ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000531410ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000531410ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000531410ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-5UTRENST00000531410ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-intronENST00000531410ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530148ENST00000368226EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530148ENST00000368227EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530148ENST00000532331EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530148ENST00000368213EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530148ENST00000368210EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530148ENST00000368215EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-3CDSENST00000530148ENST00000368207EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-5UTRENST00000530148ENST00000524481EPB41L2chr6

131276245

-PTPRKchr6

128330413

-
intron-intronENST00000530148ENST00000525459EPB41L2chr6

131276245

-PTPRKchr6

128330413

-

Top

FusionProtFeatures for EPB41L2_PTPRK


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
EPB41L2

O43491

PTPRK

Q15262