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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for NUP155

check button Gene summary
Gene informationGene symbol

NUP155

Gene ID

9631

Gene namenucleoporin 155
SynonymsATFB15|N155
Cytomap

5p13.2

Type of geneprotein-coding
Descriptionnuclear pore complex protein Nup155155 kDa nucleoporinnucleoporin 155kDnucleoporin 155kDa
Modification date20180523
UniProtAcc

O75694

ContextPubMed: NUP155 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
NUP155

GO:0006998

nuclear envelope organization

19070573


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Exon skipping events across known transcript of Ensembl for NUP155 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for NUP155

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for NUP155

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_441621537292001:37292140:37292980:37293087:37294430:3729456737292980:37293087ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1
exon_skip_441624537292980:37293087:37294430:37294567:37298969:3729908037294430:37294567ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1
exon_skip_441625537298969:37299080:37299549:37299670:37301538:3730165237299549:37299670ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1
exon_skip_441626537299549:37299670:37301538:37301652:37302880:3730301037301538:37301652ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1
exon_skip_441627537305158:37305312:37307398:37307534:37309230:3730936937307398:37307534ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2,ENST00000502533.1
exon_skip_441628537309230:37309369:37309505:37309674:37310653:3731077037309505:37309674ENSG00000113569.11ENST00000502533.1
exon_skip_441629537309230:37309369:37310653:37310845:37314299:3731442837310653:37310845ENSG00000113569.11ENST00000231498.3,ENST00000381843.2
exon_skip_441631537318089:37318187:37324093:37324209:37326002:3732606937324093:37324209ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2
exon_skip_441632537326002:37326069:37327730:37327878:37328459:3732852237327730:37327878ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2
exon_skip_441634537330139:37330234:37331786:37331897:37333564:3733373537331786:37331897ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2
exon_skip_441635537331786:37331897:37333564:37333735:37337919:3733802037333564:37333735ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2
exon_skip_441636537337919:37338020:37341191:37341344:37342650:3734274837341191:37341344ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2
exon_skip_441637537341191:37341344:37342650:37342748:37348606:3734869837342650:37342748ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2
exon_skip_441638537351291:37351458:37352838:37352931:37358182:3735825337352838:37352931ENSG00000113569.11ENST00000231498.3,ENST00000513532.1,ENST00000381843.2

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for NUP155

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_441621537292001:37292140:37292980:37293087:37294430:3729456737292980:37293087ENSG00000113569.11ENST00000231498.3,ENST00000502533.1,ENST00000381843.2,ENST00000513532.1
exon_skip_441624537292980:37293087:37294430:37294567:37298969:3729908037294430:37294567ENSG00000113569.11ENST00000231498.3,ENST00000502533.1,ENST00000381843.2,ENST00000513532.1
exon_skip_441625537298969:37299080:37299549:37299670:37301538:3730165237299549:37299670ENSG00000113569.11ENST00000231498.3,ENST00000502533.1,ENST00000381843.2,ENST00000513532.1
exon_skip_441626537299549:37299670:37301538:37301652:37302880:3730301037301538:37301652ENSG00000113569.11ENST00000231498.3,ENST00000502533.1,ENST00000381843.2,ENST00000513532.1
exon_skip_441627537305158:37305312:37307398:37307534:37309230:3730936937307398:37307534ENSG00000113569.11ENST00000231498.3,ENST00000502533.1,ENST00000381843.2,ENST00000513532.1
exon_skip_441628537309230:37309369:37309505:37309674:37310653:3731077037309505:37309674ENSG00000113569.11ENST00000502533.1
exon_skip_441629537309230:37309369:37310653:37310845:37314299:3731442837310653:37310845ENSG00000113569.11ENST00000231498.3,ENST00000381843.2
exon_skip_441631537318089:37318187:37324093:37324209:37326002:3732606937324093:37324209ENSG00000113569.11ENST00000231498.3,ENST00000381843.2,ENST00000513532.1
exon_skip_441632537326002:37326069:37327730:37327878:37328459:3732852237327730:37327878ENSG00000113569.11ENST00000231498.3,ENST00000381843.2,ENST00000513532.1
exon_skip_441634537330139:37330234:37331786:37331897:37333564:3733373537331786:37331897ENSG00000113569.11ENST00000231498.3,ENST00000381843.2,ENST00000513532.1
exon_skip_441635537331786:37331897:37333564:37333735:37337919:3733802037333564:37333735ENSG00000113569.11ENST00000231498.3,ENST00000381843.2,ENST00000513532.1
exon_skip_441636537337919:37338020:37341191:37341344:37342650:3734274837341191:37341344ENSG00000113569.11ENST00000231498.3,ENST00000381843.2,ENST00000513532.1
exon_skip_441637537341191:37341344:37342650:37342748:37348606:3734869837342650:37342748ENSG00000113569.11ENST00000231498.3,ENST00000381843.2,ENST00000513532.1
exon_skip_441638537351291:37351458:37352838:37352931:37358182:3735825337352838:37352931ENSG00000113569.11ENST00000231498.3,ENST00000381843.2,ENST00000513532.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for NUP155

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002314983729298037293087Frame-shift
ENST000002314983729443037294567Frame-shift
ENST000002314983729954937299670Frame-shift
ENST000002314983730739837307534Frame-shift
ENST000002314983732409337324209Frame-shift
ENST000002314983732773037327878Frame-shift
ENST000002314983734265037342748Frame-shift
ENST000002314983730153837301652In-frame
ENST000002314983731065337310845In-frame
ENST000002314983733178637331897In-frame
ENST000002314983733356437333735In-frame
ENST000002314983734119137341344In-frame
ENST000002314983735283837352931In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002314983729298037293087Frame-shift
ENST000002314983729443037294567Frame-shift
ENST000002314983729954937299670Frame-shift
ENST000002314983730739837307534Frame-shift
ENST000002314983732409337324209Frame-shift
ENST000002314983732773037327878Frame-shift
ENST000002314983734265037342748Frame-shift
ENST000002314983730153837301652In-frame
ENST000002314983731065337310845In-frame
ENST000002314983733178637331897In-frame
ENST000002314983733356437333735In-frame
ENST000002314983734119137341344In-frame
ENST000002314983735283837352931In-frame

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Infer the effects of exon skipping event on protein functional features for NUP155

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000231498816013913735283837352931668760154185
ENST0000023149881601391373411913734134412981450364415
ENST0000023149881601391373335643733373515521722449506
ENST0000023149881601391373317863733189717231833506543
ENST0000023149881601391373106533731084526412832812876
ENST000002314988160139137301538373016523652376511491187

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000231498816013913735283837352931668760154185
ENST0000023149881601391373411913734134412981450364415
ENST0000023149881601391373335643733373515521722449506
ENST0000023149881601391373317863733189717231833506543
ENST0000023149881601391373106533731084526412832812876
ENST000002314988160139137301538373016523652376511491187

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
O7569415418521391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O7569436441521391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O75694364415391391Natural variantID=VAR_071762;Note=In ATFB15%3B fails to accumulate at various foci of the nuclear envelope and is diffusely distributed in the cytoplasm%3B shows significantly reduced permeability of the nuclear envelope compared to wild-type. R->H;Ontology_term=ECO:000
O7569444950621391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O7569450654321391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O75694506543526526GlycosylationNote=O-linked (GlcNAc) serine;Ontology_term=ECO:0000250;evidence=ECO:0000250
O7569481287621391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O756941149118721391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
O7569415418521391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O7569436441521391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O75694364415391391Natural variantID=VAR_071762;Note=In ATFB15%3B fails to accumulate at various foci of the nuclear envelope and is diffusely distributed in the cytoplasm%3B shows significantly reduced permeability of the nuclear envelope compared to wild-type. R->H;Ontology_term=ECO:000
O7569444950621391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O7569450654321391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O75694506543526526GlycosylationNote=O-linked (GlcNAc) serine;Ontology_term=ECO:0000250;evidence=ECO:0000250
O7569481287621391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155
O756941149118721391ChainID=PRO_0000204844;Note=Nuclear pore complex protein Nup155


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SNVs in the skipped exons for NUP155

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
BLCATCGA-XF-A9SG-01exon_skip_441621
37292981372930873729301037293010Frame_Shift_DelC-p.E1336fs
LIHCTCGA-DD-A1EG-01exon_skip_441624
37294431372945673729454937294549Frame_Shift_DelA-p.L1271fs
LIHCTCGA-DD-A3A0-01exon_skip_441627
37307399373075343730748237307482Frame_Shift_DelT-p.K940fs
LIHCTCGA-DD-A39Y-01exon_skip_441629
37310654373108453731078937310789Frame_Shift_DelT-p.K831fs
LIHCTCGA-DD-A39Y-01exon_skip_441631
37324094373242093732420337324203Frame_Shift_DelT-p.S701fs
HNSCTCGA-CV-7245-01exon_skip_441634
37331787373318973733183337331833Frame_Shift_DelA-p.V528fs
COADTCGA-F4-6856-01exon_skip_441635
37333565373337353733365337333653Frame_Shift_DelT-p.N418fs
LIHCTCGA-DD-A3A0-01exon_skip_441637
37342651373427483734269537342695Frame_Shift_DelT-p.N350fs
LUSCTCGA-66-2794-01exon_skip_441625
37299550372996703729956937299569Nonsense_MutationCTp.W1221*
COADTCGA-CA-6717-01exon_skip_441635
37333565373337353733365637333656Nonsense_MutationACp.L476X
CESCTCGA-EK-A3GK-01exon_skip_441636
37341192373413443734122137341221Nonsense_MutationGCp.S406*
STADTCGA-HU-A4H8-01exon_skip_441638
37352839373529313735291137352911Nonsense_MutationGAp.R162*
COADTCGA-CA-6717-01exon_skip_441624
37294431372945673729442937294429Splice_SiteAG.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
HS819T_FIBROBLAST37301539373016523730160137301601Frame_Shift_DelG-p.H1168fs
NCIH1417_LUNG37292981372930873729298737292987Missense_MutationCTp.C1344Y
CL34_LARGE_INTESTINE37292981372930873729301537293015Missense_MutationCGp.V1335L
ESS1_ENDOMETRIUM37292981372930873729305337293053Missense_MutationTCp.H1322R
HT1376_URINARY_TRACT37294431372945673729443537294435Missense_MutationGAp.S1309L
PC9_LUNG37294431372945673729452737294527Missense_MutationCGp.L1278F
HS766T_PANCREAS37294431372945673729454737294547Missense_MutationCGp.E1272Q
RERFLCFM_LUNG37299550372996703729959237299592Missense_MutationGCp.P1214A
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE37299550372996703729964237299642Missense_MutationTAp.K1197I
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE37301539373016523730155837301558Missense_MutationTCp.E1181G
CCK81_LARGE_INTESTINE37307399373075343730749837307498Missense_MutationGAp.T935M
COLO684_ENDOMETRIUM37310654373108453731068937310689Missense_MutationGAp.L865F
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE37310654373108453731069637310696Missense_MutationGCp.I862M
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE37310654373108453731077937310779Missense_MutationCAp.G835W
GP2D_LARGE_INTESTINE37310654373108453731079337310793Missense_MutationTAp.D830V
GP5D_LARGE_INTESTINE37310654373108453731079337310793Missense_MutationTAp.D830V
SNU324_PANCREAS37324094373242093732411837324118Missense_MutationGAp.A728V
SNGM_ENDOMETRIUM37324094373242093732419037324190Missense_MutationCTp.C704Y
WM2664_SKIN37331787373318973733180137331801Missense_MutationAGp.F539L
KYSE410_OESOPHAGUS37331787373318973733187037331870Missense_MutationGAp.P516S
KYSE140_OESOPHAGUS37333565373337353733364837333648Missense_MutationCAp.D479Y
HT1376_URINARY_TRACT37333565373337353733368737333687Missense_MutationCTp.E466K
MRKNU1_BREAST37341192373413443734121837341218Missense_MutationTAp.K407I
SNUC4_LARGE_INTESTINE37341192373413443734122737341227Missense_MutationTCp.K404R
JHUEM7_ENDOMETRIUM37341192373413443734124337341243Missense_MutationAGp.S399P
A204_SOFT_TISSUE37341192373413443734128737341287Missense_MutationGTp.T384K
TTC642_SOFT_TISSUE37341192373413443734128737341287Missense_MutationGTp.T384K
LNCAPCLONEFGC_PROSTATE37341192373413443734129137341291Missense_MutationTCp.N383D
NCIH835_LUNG37341192373413443734131737341317Missense_MutationGTp.P374Q
SNU1040_LARGE_INTESTINE37342651373427483734273737342737Missense_MutationCTp.R336H
NCIH720_LUNG37352839373529313735286937352869Missense_MutationGCp.L176V
IM95_STOMACH37352839373529313735288337352883Missense_MutationAGp.V171A
A101D_SKIN37331787373318973733181037331810Nonsense_MutationCAp.E536*

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for NUP155

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for NUP155


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for NUP155


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RelatedDrugs for NUP155

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NUP155

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
NUP155C4014269ATRIAL FIBRILLATION, FAMILIAL, 151UNIPROT